3300029655: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029655
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128792 | Gp0224285 | Ga0206091
• Sample Name: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32681261
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 33.3049
  • Long. (^o): -116.2547
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F000400	Metagenome / Metatranscriptome	1181	Y
F004178	Metagenome / Metatranscriptome	449	Y
F004947	Metagenome / Metatranscriptome	417	Y
F011252	Metagenome / Metatranscriptome	293	Y
F015326	Metagenome / Metatranscriptome	255	Y
F018507	Metagenome / Metatranscriptome	234	Y
F018997	Metagenome / Metatranscriptome	232	Y
F021903	Metagenome / Metatranscriptome	216	Y
F033285	Metagenome / Metatranscriptome	177	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0206091_102736	Not Available	1376
Ga0206091_104053	All Organisms → cellular organisms → Bacteria	1126
Ga0206091_105915	Not Available	927
Ga0206091_106835	Not Available	861
Ga0206091_107615	Not Available	814
Ga0206091_107728	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	808
Ga0206091_107743	Not Available	807
Ga0206091_109330	Not Available	732
Ga0206091_109655	Not Available	720
Ga0206091_112590	Not Available	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206091_102736	Ga0206091_1027361	F063225	SSATTTITVCLSPAPFCGDGVCAGSETALPTAQARCFDCGRLRGVISLAVGQKDQLVNITVSVWADPVNPALYLRNGTAVPAPHFTTISDSKGFFSINNLSFDAGLSTRAAGQAKRRYYFSLSGSFTDRTTGTDLQTELLTLWWNYELTNTQWSGTGPLTNTNNSPSFYFYMTPPFVTADALIRIILSWGNLISNPANSLPDLDLVVAGPVDASSISTFGTGIVNFQNKDLHSTFKVLPYAKLVTDSAQGYGPEVMDFYGQPGALALGFSSSYAPGAAANAYEVWVDRPNSSPNQDSSFTFLFDTNSFIVVYQNDGTTGGNKQVLFDARTNVPYAYGFYNTDPWNKVPAEATLWHIIDLSQSAGGVVFNGFPGENSTDTTATPGAKYGYDGSFFETTKSIPCGHTASRGASPAYCPATLTYPQSKKK
Ga0206091_104053	Ga0206091_1040532	F000400	MRDPEIIENELMEMSAILDDTIKFERIVAWCATHPDEVPFALHQLLHRRPKDQSQSPSA
Ga0206091_104684	Ga0206091_1046842	F018997	MKNKKSKSLELTLQETKLMEQLRKQPELMERFQTILEISSSADGPIKTADEIEGLLIEEMRRLGNTTMGTWAAGAEERLVKQFKEEHPSARARKKKR
Ga0206091_105915	Ga0206091_1059151	F034481	KLLSILSVVCFLVVLAAANHGENEAAQQVVNPADWHGTWTSLNRYGGQTYTCPVGNTLYGVYSNAGFFVGTITDRVVEGVWFEGGRGDRNYYQGSFRITISDDNQEFDGVFNRLTTGNEIRWHESRLGAPYPSNPTLEQCFAPDNTAENVLGSYYRSTETGALAGSTFICKDYWEQIYGSFHSPEGYLAGWSVDDATGFHGYRYDSTGESGAYILRALSRDRVKGFYWRGRLAIQNYPTSKYEAFDRSSFTATLNQCEQVGPGFVERLHGPDYVPYYLVNSSSIVSFSYLTFLIIALTAILF
Ga0206091_106835	Ga0206091_1068351	F073141	MATISTNDQKEDNKSESVNISDYLSRLYDITQITDEELNTWNEAYSYKGFDRKKVIMELAKKVPDVKTSQQIILVCGLLGPQRASQVKLLNGRTIASYGIPASGQKGTNNLSCQRITAATADLCAYLLKRLNVPKRLNIACPAWLQFPSAGSITMPQDLRVMHIEFHRRFSTAISGKFNEQIYDQMTVNSYYDRRLNLFENLNPDIMAEAPSHLVPIPAPTFNPNRGDVGPTKTTDSQRFKKQ
Ga0206091_107615	Ga0206091_1076151	F000344	MRPIHPHAAESGVGKHTARESESAQACAAGKERVANAHPHKL
Ga0206091_107728	Ga0206091_1077282	F004178	MRPKHPHAAESGVGEHTARESEAPNVCRRERARGERP
Ga0206091_107743	Ga0206091_1077431	F004178	MRPRHPHAADSGVGEHTARESEAPNVCRRERARGER
Ga0206091_109330	Ga0206091_1093301	F021903	VVAGPVDQSSITTFGTGIVNFQNKDQHSSLRVLPYAKLVTDSAQGYGPEVMDFYGQPGQFALGFSSTYAPGAAANAYEIWIDRPNSSPNQDSSFTFLFDTNAFIVIYQNDNVANKQVLFDARTGVPYAYGFYNTDQWNKVPDEATLWHVIDLSQAAGGVLYNGFPGENSTDQTAVAGAKYGYDAKFFESTKSIPCGHTASRGASPAYCPATLTYPQSKKK
Ga0206091_109655	Ga0206091_1096551	F052341	QLLRMQIMFGGKNARVMVVMMISILSFFLIQESAAIDCPKDNSQDRIYPGCNCFFEWNDANRVGNWTFEENWMQLNEPGWVAFVSIAGDNTIHLDEARRINEIYIGPNRWDTTRVVLDEDLTVEYDDVPVINSVRGYRQPTGQIRLVIQGKGFGFVSEDIVVTATQVIDNFPDNNVENQITQVYNCEYATLVYRDAQIECNIFTASLYPYSLSVTVAANGHLSEPALISTYLQ
Ga0206091_112590	Ga0206091_1125901	F021903	VVAGPVDQSSITTFGTGIVNFQNKDQHSSLRVLPYAKLVTDSAQGYGPEVMDFYGQPGQLALGFSSTYAPGAAANAYEIWVDRPNSSPNQDSSFTFLFDTNAFIVIYQNDNVENKQVLFDARTGVPYAYGFYNTDQWNKVPDEATLWHIIDLSQAAGGVLYNGFPGENSTDQTAVAGAKFGYDAKFFESTKSIPCGHTASRGASPAYCPA
Ga0206091_113174	Ga0206091_1131741	F102215	LIKRLTRPMRVAIVILFCAIVAAAFAGVTERDDHISANFWDKYQEPAAHQIKTIVRRSVDQLVNARQTAAVNFTTWCFEYQQYIDQFKWGLAATDPETNTEYFHGIVEDSSTDPAVVVGYIYGYSLDNQRLVQMAVDYNDNGYMRLFSFQFNPRNERYSDAFTVFSNADTTLTPQFLGSPEYTSLTKCA
Ga0206091_113207	Ga0206091_1132071	F004947	KSIIVIIFAIAVIALAQPAPPKEPSDFSAYGFVIEWHNDFHRRFKGDIFEDFTNHRQRIDAERHASYGGVITFFRFFDKEREYEYFGQTDMCWQAHFNNTQHPVFEWLEHAHYAGNCHGRHSQGNVKGHLFREHGSESLRREICVADNSTYTPLWIEHHHGRSGRILEFLQFKSGAPDPAVFTLPGSCTKKQEEILA
Ga0206091_113749	Ga0206091_1137491	F033285	TNKLSLFVLFAVFVCIATAELTRCPKIHASIENSKVSASWEGFVPFEVISFEWGVSSMKNGELEANICKESPFFHGKSDVLDWTYVRKSTQVQSQYLELKAGENYQVVLRITSRGGKQYWITSSPLSAPEKEPLEETKTVSRNERNGACPTCTQNQPCANCPIDVANRKRAYEETVAERLNKIYGPALFLKPADSVYTAV
Ga0206091_117355	Ga0206091_1173551	F018507	TRMNFSAVLILFLGLVAFVYTACVSPPSDLQVCVLPSTARVPQEYANTNADRQLQSYFFFLQSIKAVPTDECSLAYIDFACSQAYPRCAGDAASGLGLPVNTCYFQCSNFVEKCRGQLIGVERPDCGTFSVSPDCTAVSVKLPQDTNGASVFSASLALFSVLALVLVL
Ga0206091_118140	Ga0206091_1181401	F011252	HGGQVRSRSCRSGRNFLSQYSFIEPNAAFPLPPTFNFDEYIETEQELWALFPETDGRRVNFVQIGLTAMIYAEAPDRGAELGPDETYILMPCADYTMRPIRMRACRRLTLSEYRMGHLTAIKLVGKVNEAGDVMREIGCQILGEEVIQEAQARLADYGDDQ
Ga0206091_118766	Ga0206091_1187661	F015326	NLQMEKCYCDWGEHGGDWCMCLGFFSGNMECCEPCCGKPCNTNDGVYCCLSWFPGCCFAGPKCLAASQNQECAFVNHGVPFLLLLIFIIPVIGILGYVVLWTIETAIRFNLRKQHGIGDTSKWDICDCCGIWFIVPGPCFACQEMRSVPKDYWDWYKAFNDKKFPAETQLE