3300029619: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35991

Overview

Basic Information

• IMG/M Taxon OID: 3300029619
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283767 | Ga0245131
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35991
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 224449994
• Sequencing Scaffolds: 8
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F042095	Metagenome	159	N
F056682	Metagenome	137	Y
F057001	Metagenome	137	Y
F066905	Metagenome	126	Y
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F089590	Metagenome	109	N
F090513	Metagenome	108	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245131_1000031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	282850
Ga0245131_1000137	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	154187
Ga0245131_1000876	All Organisms → cellular organisms → Bacteria	40995
Ga0245131_1001977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15286
Ga0245131_1005602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4199
Ga0245131_1008406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2779
Ga0245131_1010828	Not Available	2204
Ga0245131_1044526	Not Available	680

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245131_1000031	Ga0245131_100003170	F066905	MKGVEIMQEEVRGCGCDNNGGFLSNLFGRNGCGCGDNSILFFILIFLILFTNCGCGNR
Ga0245131_1000137	Ga0245131_1000137130	F076653	MTIRDKYFGWKDIFFGRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFDRMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRFWIEKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245131_1000137	Ga0245131_1000137197	F085718	MVIEFDFEIYKNGDYDKVYLRNGEEARVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRNINSQSGLDLMLSVKERKPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVLYYVDKLEEDKCFDELCEKIKVKRDRIYNMEIISLSDDEATV
Ga0245131_1000137	Ga0245131_1000137199	F078006	MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILRKAADELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0245131_1000137	Ga0245131_1000137205	F080673	MELQDEALLYLRDNITREEAYYILTTDKEMLAILIADKKDGSKRIKILDVEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARML
Ga0245131_1000137	Ga0245131_1000137210	F057001	MPIQVPMARANRMTNKELNKVQNEVKKASEKTLTGAIKTWCQLFKSGKEINEILKENEIKVDKSIVPALVNLAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGTDKRIVKCAVPIKRYTFSLIAKCVTYYLTHPKNDR
Ga0245131_1000137	Ga0245131_100013742	F042095	MDKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDNYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYVNIQVCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLNDWVSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNCSTHSQQRSDDFVDSFYKLVTEWDQITMTSVANDGKRNQFYGLSVSMYTAAHPTENQRPSGTEQAPEGFVKGSSNGFPATPMEKIYVLKNNYAQRWTIKPE
Ga0245131_1000137	Ga0245131_100013745	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDETFDDIRRIADDEVKDKS
Ga0245131_1000137	Ga0245131_10001376	F083452	MSGRVKIKIKDKKPKIDVFKIIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0245131_1000137	Ga0245131_100013778	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTSIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVDNPDVKLDMPDLIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAILSSNIGKYINEVEQGNVAQRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245131_1000876	Ga0245131_10008765	F039198	MQITSCEVTNTKYTQIYLTEEELQKQETKELIKKYKKEKHRVAIFVTGKENYPEILKKIITKQVELKNNVC
Ga0245131_1001977	Ga0245131_100197712	F088921	LGAAIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKREKYINGEIYGEKNQIIVANKSAKIRDKMWSKS
Ga0245131_1005602	Ga0245131_10056026	F087336	MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKDDAIGYGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLGIAFQILPLKSKQKRAP
Ga0245131_1008406	Ga0245131_10084062	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFLYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLSYVLFFFFKIYLKKIDFFQNIA
Ga0245131_1010828	Ga0245131_10108282	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245131_1044526	Ga0245131_10445262	F056682	VVEKLHESETVKTQSRAGKVANQSIAQGETNSTSFRAFPSKNRSTFPIQKLGKNYKNQEV