3300029579: Human fecal microbial communities from Shanghai, China - P017V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029579
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283516 | Ga0244893
• Sample Name: Human fecal microbial communities from Shanghai, China - P017V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197186014
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F047755	Metagenome	149	Y
F068941	Metagenome	124	N
F073656	Metagenome	120	N
F082887	Metagenome / Metatranscriptome	113	Y
F088921	Metagenome	109	N
F092227	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244893_100049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	202016
Ga0244893_100167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	114605
Ga0244893_100459	All Organisms → cellular organisms → Bacteria	54772
Ga0244893_100668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	40264
Ga0244893_103960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6821
Ga0244893_107174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	3757
Ga0244893_109293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2885
Ga0244893_113219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2044
Ga0244893_119559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1396
Ga0244893_129329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.	934

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244893_100049	Ga0244893_100049174	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILERIITKQVELNKNVC
Ga0244893_100167	Ga0244893_100167100	F047755	MESEKVKHLIDMINEMDIKDKLRLAICMSQSQWYGLIYNTKENYEKFDTMLKEVDEEYRTTLIYFGQNKYFNINFVMAKLMEMEQADRNKIALYLFNSIKNQXYYI
Ga0244893_100459	Ga0244893_10045976	F082887	MEKLKKIAKYATNILAIVSALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK
Ga0244893_100668	Ga0244893_10066827	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYXXXXXXXXXSGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0244893_103960	Ga0244893_1039602	F068941	VKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG
Ga0244893_107174	Ga0244893_1071744	F082887	MEKVKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQIIAVVQGVIGTYLLGQKAISNKEG
Ga0244893_109293	Ga0244893_1092932	F073656	MTMEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQTQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244893_113219	Ga0244893_1132193	F092227	MKEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0244893_119559	Ga0244893_1195593	F047755	MENNKVEYLINMINDMDIKDKLRLAICMSQSKWSGLIYNTKENYERFDKMLKEVDEEYRTTLINFTKYKLVMFVMAKLMEMETTEQNKVALYLFNNIKLC
Ga0244893_129329	Ga0244893_1293292	F097493	MYKFYSKNGTAYFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLQIAELKAGVSNE
Ga0244893_133433	Ga0244893_1334332	F088921	CKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNK
Ga0244893_150939	Ga0244893_1509391	F026592	CRPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE