3300029576: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35512

Overview

Basic Information

• IMG/M Taxon OID: 3300029576
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283736 | Ga0245100
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35512
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 186663653
• Sequencing Scaffolds: 14
• Novel Protein Genes: 33
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F044554	Metagenome	154	N
F050794	Metagenome	145	N
F055715	Metagenome	138	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F064817	Metagenome	128	N
F074899	Metagenome / Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245100_100149	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	142308
Ga0245100_100177	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	123136
Ga0245100_100378	Not Available	65594
Ga0245100_100605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	38019
Ga0245100_100636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	35791
Ga0245100_100850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	24407
Ga0245100_101523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12404
Ga0245100_101891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9689
Ga0245100_105158	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3805
Ga0245100_105975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3402

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245100_100149	Ga0245100_10014912	F102167	VVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSREKITGSYTMTTFSFHEKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK
Ga0245100_100149	Ga0245100_100149130	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTLYNPYLSWINHYYHYLPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDRRDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYTFNNNLK
Ga0245100_100149	Ga0245100_100149140	F083451	MDKKEKQILDLLMSRKDIRKLVEKSNECYSRMDFVGAMRYRQEIKDIVDRESKIMLTKSESLVGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAEMVNETDRDKIEEFNKKLGHD
Ga0245100_100149	Ga0245100_100149159	F078005	MKKSEFVKELEKIIDMIKTEDNGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEADVMAGMDDIDFTCLMSEVYKQKAIKAIMMEKDDDEDN
Ga0245100_100149	Ga0245100_10014928	F058555	MFGTKITLLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKYEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSASRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNNKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVANTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0245100_100149	Ga0245100_1001493	F057001	MPIQVPRARANLMTSKDLNKVQSEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKAVVPALVALAKDKEVVIQLCKEILPRVNDTFCAYKEVEREYYDKQDQANNSKLPLDKVNDIAVLGDTHKRFGYCEPIAYNDTGSVPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNGK
Ga0245100_100149	Ga0245100_10014941	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQSLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
Ga0245100_100149	Ga0245100_10014948	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQTCKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELSNVGQRMTKMPEAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRMHPGPSDMWNYFDINTLPSFEVDKINPNINDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRSITWFIVNCSTHSQKRSDDFVDSFYKLVTEWDQITMTSVASDNKRNQFYGLQVSMYLAMYPNENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA
Ga0245100_100149	Ga0245100_10014950	F089590	MTLVMDNKGMLDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTIGEAFPDTYIVKVFKSIFNRVNILKLFGSAKSLPDDAFDDIKKIADEEVKDKS
Ga0245100_100149	Ga0245100_10014951	F075481	MKRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0245100_100149	Ga0245100_10014957	F106193	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP
Ga0245100_100149	Ga0245100_10014975	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVIKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245100_100149	Ga0245100_10014984	F077313	MGKYVIKRKIPKYQDAGEVDPVMPGNIVGLQGLGVEPLVSSTRIGFDIQQPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGVKTANIVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEEGTKVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSMAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGSMDIGDVEDPDVKLDMPELIDPNTLPKTNTSAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNAPDSQRGALSSNLQAIMSSNIGKYINDVEQGNVAQRTWADNINARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245100_100149	Ga0245100_10014987	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRLQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
Ga0245100_100149	Ga0245100_1001499	F083452	MSGRIKIKSKNKDKKPKIDVFKVIEDRFKNMNELRDLIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRK
Ga0245100_100177	Ga0245100_100177104	F080673	MDEIMKLQDEALLYLRDNITREEAYYILTKENEMTEVLIAKKKDGSKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFVYYMARLCV
Ga0245100_100177	Ga0245100_10017797	F085718	MVIEFDFEIYKNGDYDKVYLRNGREARVLCDNGKGDRPIVVMIENNNVDDYIILRYNETGRRSISSQSGLDLMLSIKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
Ga0245100_100177	Ga0245100_10017799	F078006	MEDNILKRAAAELKEAGCRVFAWKDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI
Ga0245100_100378	Ga0245100_10037811	F094005	MKKEVIKLKEGNSIIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLVEKLNE
Ga0245100_100378	Ga0245100_10037812	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS
Ga0245100_100378	Ga0245100_10037823	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTFNGAADALVNFAMNFTDGEANIKSINGISSNIMQITFTV
Ga0245100_100378	Ga0245100_10037825	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTRRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNYSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245100_100605	Ga0245100_10060530	F087336	MVAELEQVPKAFRAVGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERNTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0245100_100636	Ga0245100_10063623	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPCLTGAKWFVILLTIVPAGSRTRAGSSLPLSPASNIF
Ga0245100_100850	Ga0245100_10085013	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFFFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245100_101523	Ga0245100_1015234	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNRLI
Ga0245100_101891	Ga0245100_1018916	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIALQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245100_105158	Ga0245100_1051588	F099451	MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVFDKVLCLGVTSNE
Ga0245100_105975	Ga0245100_1059754	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPRPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWIPDHFYKKLLPYVLFPFFKIYLKKIDFFQNIA
Ga0245100_112660	Ga0245100_1126602	F055715	LTKANEFDKIIELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN
Ga0245100_112919	Ga0245100_1129193	F088920	VSANLHHYPAFEAGLILHLILHLILHFSPKAAIFAPKRAFSFLFVPTLFFVGLSVLSPQTSLKISGQASLY
Ga0245100_132921	Ga0245100_1329212	F081453	MFPFFLFAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0245100_135937	Ga0245100_1359372	F081354	VKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL