3300029575: Human fecal microbial communities from Shanghai, China - P023V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029575
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283526 | Ga0244903
• Sample Name: Human fecal microbial communities from Shanghai, China - P023V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 213966007
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F029444	Metagenome	188	Y
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F055715	Metagenome	138	N
F067845	Metagenome	125	N
F073656	Metagenome	120	N
F076064	Metagenome	118	N
F076190	Metagenome	118	Y
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F090513	Metagenome	108	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244903_100008	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	414285
Ga0244903_100021	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	342996
Ga0244903_100242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	118750
Ga0244903_100362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	91765
Ga0244903_100581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	65304
Ga0244903_100697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56136
Ga0244903_100828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	48390
Ga0244903_101023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	40088
Ga0244903_101737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	21553
Ga0244903_101977	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	18179
Ga0244903_102087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16937
Ga0244903_102170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	16113
Ga0244903_102280	All Organisms → cellular organisms → Bacteria	15203
Ga0244903_102754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11406
Ga0244903_131367	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	726
Ga0244903_131605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	720

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244903_100008	Ga0244903_100008349	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHIVANDEAYYAAMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEVKRPPRPALKFY
Ga0244903_100021	Ga0244903_10002184	F105374	MKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVACVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0244903_100242	Ga0244903_1002428	F044554	VLAGWFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFFFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0244903_100362	Ga0244903_10036281	F013656	MKKIYKEPNKSEIETTINVLYSENILSICTNKVDLQKKLNKLLGEPEKEYKIKRSIAGSTWNISLDDKTKIQKIILKANIYDI
Ga0244903_100581	Ga0244903_10058115	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSTLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
Ga0244903_100697	Ga0244903_1006971	F055715	MNELLIERMAKKFERASKNKLKKFLTNERFCDKINELIRVGTAKILDN
Ga0244903_100828	Ga0244903_10082827	F029444	MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEKSGIIAERESQIFGRRFVGFDS
Ga0244903_101023	Ga0244903_10102324	F088920	VSARPHYYPAFGAGLILHLILHFSQKAAIFAPKRVILLIFVPTSFFVCSAVFSPQASPKISGQTSLH
Ga0244903_101737	Ga0244903_1017376	F090513	MEWKLLHIKHILYMQPFGALKIASQSVGNKNGTKAVLQGWAAAFVPYMLSFTYIKRKRRNTD
Ga0244903_101977	Ga0244903_1019772	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244903_102087	Ga0244903_1020874	F088920	VSARPHYYLAFGAGLILHLILHFSQKVAIFAPKRVILLLFVPTLFFCFWAVFPLQASPKISGQTSLYQPWLSPQCLFKD
Ga0244903_102170	Ga0244903_1021706	F042936	MGRGGGKGRVWKPKEGIMKTSGIVDRGEDTIRNVEKVEQEGALTPPYLGKVYFRSWLRGK
Ga0244903_102280	Ga0244903_10228018	F039198	MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILERIITKQVELNKNVC
Ga0244903_102754	Ga0244903_10275412	F076190	WVTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNGLKSVRIWVEKTQNNSLYPYFQR
Ga0244903_131367	Ga0244903_1313671	F076064	LPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0244903_131605	Ga0244903_1316051	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFID