3300029557: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35705

Overview

Basic Information

• IMG/M Taxon OID: 3300029557
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283756 | Ga0245120
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35705
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161372204
• Sequencing Scaffolds: 25
• Novel Protein Genes: 31
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F039147	Metagenome	164	N
F041208	Metagenome	160	N
F042936	Metagenome	157	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F044554	Metagenome	154	N
F045105	Metagenome	153	N
F047126	Metagenome	150	N
F051934	Metagenome	143	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245120_100073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	214918
Ga0245120_100128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	152626
Ga0245120_100137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	145732
Ga0245120_100187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	115595
Ga0245120_100213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	102757
Ga0245120_100242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	89633
Ga0245120_100309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	69512
Ga0245120_100341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	63440
Ga0245120_100358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	60616
Ga0245120_100366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	59050

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245120_100073	Ga0245120_10007330	F043413	MTERKLREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGRAYTLEIEGCGGGDFMSGMFLPDETDSWSDSPFGFDGVLWDDDMQSPPEGAPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEQLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELAGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0245120_100128	Ga0245120_100128146	F056309	TCLRRTPSLSVVPLLLGDSDSLSVSCGMEPEQEALSIVSFKD
Ga0245120_100137	Ga0245120_100137132	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPLEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERTLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE
Ga0245120_100187	Ga0245120_10018796	F057385	MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTTMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKSYVKVTVPPEKIAEMTKALLEMIHSVPSIGAYMDAFFSAADTSWDDLLKELDEADLYADDVVYEYWMTEAGELVRMTASVKINNGGEEPLPISFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYDGEDPVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTFATMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
Ga0245120_100213	Ga0245120_10021318	F087213	MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0245120_100213	Ga0245120_10021357	F082714	MVVGIRFAADAPVRTVLQAVLPIFSTVDVDFLVREYWVCTFGNGLPERRFTSQEMQRALDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAAFEALTTAGLCEKVEEVEKETLAHWGF
Ga0245120_100242	Ga0245120_1002427	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGAIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMAERVTTLTPKQARKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
Ga0245120_100309	Ga0245120_10030911	F077319	MLIRNATLQMSATERACMDVRVMNGCVWEMGAALVKGLYEAEIDLHGDVLMPGRMLETPVPAADEKTLRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
Ga0245120_100309	Ga0245120_10030950	F051934	MGLMRRLAAAALAAVLVLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQSTTLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSHAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0245120_100341	Ga0245120_10034142	F074898	MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMMAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGRPVDAALLTTPLKLLDGRSPSEVLGLLAEDINKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQTSEVARAYRSAMRGYLLSNFRLSGQIGIEKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFQLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDGLF
Ga0245120_100341	Ga0245120_10034146	F073574	MLLPAAVRPYAADVDGTDSRVRCAIVLNGSQDLQIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWVTMRCTRCHAVFRGDLECD
Ga0245120_100358	Ga0245120_10035846	F077320	MKRKGMRRRRKLVLLAVLLIMVGIAAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYPASGHYQIVWEGVSAEAAEAYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW
Ga0245120_100366	Ga0245120_10036632	F101193	MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0245120_100366	Ga0245120_10036638	F041208	MRKILAMLLSVMLLLTAAVAETPAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLADKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLVLYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDTFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCHTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG
Ga0245120_100436	Ga0245120_1004362	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAISAALAIQGGSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAACFTLLMQGYLPPIYQRETVQQLQALLTGGLTDEAGLRQLETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLLDVRDSDLSVVGSVQIPSFSALRASILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDIPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRAMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0245120_100436	Ga0245120_10043630	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLIRAEIPAAQKRDWKPLILPFAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0245120_100475	Ga0245120_10047529	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALVGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGTLAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKTIEEKAARIES
Ga0245120_100507	Ga0245120_10050719	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPNNVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQEKGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYRVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGARNTALQHFAEENPKVILAQETLTKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVADYVSRLNGIYRDAVTRDSKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALEAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIRVNDYEKTLTELRRQQENAPAWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEEADKLIEGLEQ
Ga0245120_100507	Ga0245120_1005078	F051935	MKRLLGLLLAMMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVSAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
Ga0245120_100516	Ga0245120_10051636	F082715	MMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAHTRWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGSEVVSTVNLDARDATILLVEPDEEGNG
Ga0245120_100939	Ga0245120_10093919	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIDKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKIRSK
Ga0245120_100990	Ga0245120_10099017	F047126	VYLKTKKMTNISQTQAGFKSKNLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRTAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC
Ga0245120_101019	Ga0245120_10101910	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAESILFLPFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0245120_101054	Ga0245120_1010548	F042936	MGRGGGKGRVWKTKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0245120_101161	Ga0245120_1011619	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSTLLYPFRSSPLMAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0245120_102347	Ga0245120_1023472	F089053	LFGFDVKFGCVVDECRPAKGCVRKWLYVFANGQPELSTAEEANVKNMEVSL
Ga0245120_106634	Ga0245120_1066341	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKQMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREAYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0245120_107784	Ga0245120_1077841	F068855	MVPTISRCPSSSVPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW
Ga0245120_112391	Ga0245120_1123914	F032286	VTPVRHRALIFDVRFFAGNAADDALVTGGTFRFCRLVCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLDLIFTFDFAALSERRSCPEDRSRRFVFLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAKI
Ga0245120_113346	Ga0245120_1133464	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSRTTPEIFG
Ga0245120_115929	Ga0245120_1159291	F089053	MEGPRPDKFAFGVRIGRVVDECRPVKGCIRKWLYIFANGRLKLSTAEEVNVKSMEVSL