3300029522: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012170-74

Overview

Basic Information

• IMG/M Taxon OID: 3300029522
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283458 | Ga0244835
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012170-74
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173160368
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F067845	Metagenome	125	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244835_1002016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11956
Ga0244835_1029042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	956
Ga0244835_1029276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	950
Ga0244835_1056581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244835_1002016	Ga0244835_100201619	F029444	MEVSEQLTGFEPEDLMSRTVSNLQSPFREDFSLQKSGIIAEKAAPFFNF
Ga0244835_1029042	Ga0244835_10290422	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244835_1029276	Ga0244835_10292762	F092227	VWYSMNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
Ga0244835_1056581	Ga0244835_10565812	F026592	VCQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE