NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029485

3300029485: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001905-95



Overview

Basic Information
IMG/M Taxon OID3300029485 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133130 | Gp0283324 | Ga0244147
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001905-95
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size209044486
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F076189Metagenome118N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244147_108444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4141Open in IMG/M
Ga0244147_113178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2683Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244147_108444Ga0244147_1084445F026592RTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0244147_113178Ga0244147_1131781F076189ARQAVLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLYAIQSAQKQLKMLCNFHENTFRLLIFYTNYAIL

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