3300029454: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001938-25

Overview

Basic Information

• IMG/M Taxon OID: 3300029454
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283357 | Ga0244180
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001938-25
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86593610
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F062845	Metagenome	130	N
F068855	Metagenome	124	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244180_101335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10441
Ga0244180_101544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8752
Ga0244180_103441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3435

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244180_101335	Ga0244180_1013352	F068855	VPTVEAKGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0244180_101544	Ga0244180_1015445	F029444	MEVSEQLTGFEPEDLMSWTVSNLQSPFREDFSLEISGIIAEKESQIFGRRFVGFDS
Ga0244180_103441	Ga0244180_1034412	F062845	MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA