3300029443: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_10_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029443
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283009 | Ga0243848
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_10_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 265856161
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F055715	Metagenome	138	N
F059106	Metagenome	134	N
F068811	Metagenome	124	N
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F078693	Metagenome	116	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243848_1000995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	37735
Ga0243848_1001958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	18868
Ga0243848_1002038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18031
Ga0243848_1002784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12887
Ga0243848_1003256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10833
Ga0243848_1004124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	8492
Ga0243848_1004467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7799
Ga0243848_1010041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3483
Ga0243848_1047400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	804

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243848_1000995	Ga0243848_100099533	F071325	CSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPSAFLKAFHPHAIRFPAAFLLVHRFYLTFEELLSCATAYL
Ga0243848_1001958	Ga0243848_100195811	F078693	MVLAPVRGAERFYVKWNCSLLMSKENKKTTSDFDALGPRERGCSPLSDPEGEVEVEKC
Ga0243848_1002038	Ga0243848_10020381	F071325	KFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0243848_1002784	Ga0243848_10027846	F042936	VWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0243848_1003256	Ga0243848_10032561	F090515	VITCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRH
Ga0243848_1004124	Ga0243848_100412411	F059106	MHAIVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243848_1004467	Ga0243848_10044674	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI
Ga0243848_1010041	Ga0243848_10100411	F068855	VPTVEAQGPQARKTLALQGLQAEKENKNANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGW
Ga0243848_1047400	Ga0243848_10474001	F055715	LTKADEFDKINELLIERTAKKFKRTSKNKLKKFLTNEKFCDKINELIQVGTAEILDN