3300029438: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_28_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029438
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282894 | Ga0243733
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_28_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 233711893
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067845	Metagenome	125	N
F071325	Metagenome	122	N
F082715	Metagenome / Metatranscriptome	113	N
F087335	Metagenome	110	N
F089053	Metagenome	109	Y
F090513	Metagenome	108	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243733_1000775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	34266
Ga0243733_1006326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4861
Ga0243733_1008333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3779
Ga0243733_1012501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2631
Ga0243733_1019377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1773
Ga0243733_1022752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1532
Ga0243733_1072484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243733_1000775	Ga0243733_10007756	F101193	MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFAAWLLLMLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0243733_1006326	Ga0243733_10063261	F082715	MMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYG
Ga0243733_1008333	Ga0243733_10083335	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAF
Ga0243733_1012501	Ga0243733_10125015	F089053	MEGPRPDKFASSVKLERVVDGCRPAKGYIKKWVHESANGQPELSTTEEVNVKNMEAFL
Ga0243733_1019377	Ga0243733_10193773	F071325	VLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243733_1022752	Ga0243733_10227521	F087335	MLELYFNDGNFLPESREEEQSAETVLNSMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTEETVEEVYQRASNYDFDEPCAGNMPS
Ga0243733_1072484	Ga0243733_10724841	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYV