3300029399: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_3_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029399
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281866 | Ga0242750
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_3_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116372553
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F056309	Metagenome	137	N
F070093	Metagenome	123	N
F088920	Metagenome	109	Y
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242750_100258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	45065
Ga0242750_100922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	17081
Ga0242750_101416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	11838
Ga0242750_101632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	10506
Ga0242750_105132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3449
Ga0242750_123114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	802

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242750_100258	Ga0242750_10025822	F088920	VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAIPLLFVPTLFSARLTAFSLHTSPKISGQTSLHQPWLSPYCLFKD
Ga0242750_100922	Ga0242750_10092217	F056309	MWNAVRNTKRVRSTVKETKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0242750_101416	Ga0242750_10141613	F056309	CLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0242750_101632	Ga0242750_10163210	F056309	TKRMCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0242750_105132	Ga0242750_1051321	F070093	FESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLSELNPKSN
Ga0242750_108554	Ga0242750_1085543	F101356	VGELIPVVTPGKDGLSNSKFATTKIKSEGKRSVLLYRSLASQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0242750_123114	Ga0242750_1231141	F047125	VVLLLMVLGVMSSGFWAADALDHMRQEILQQEGKRRGWWS