NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029397

3300029397: Anode biofilm microbial communities from acetate-fed MFC - AM-anode biofilm



Overview

Basic Information
IMG/M Taxon OID3300029397 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133115 | Gp0282671 | Ga0243510
Sample NameAnode biofilm microbial communities from acetate-fed MFC - AM-anode biofilm
Sequencing StatusPermanent Draft
Sequencing CenterTokyo University of Pharmacy and Life Sciences
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size110244754
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameElectrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan
TypeEngineered
TaxonomyEngineered → Industrial Production → Engineered Product → Bioanode → Unclassified → Anode Biofilm → Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJapan: Tokyo
CoordinatesLat. (o)35.638Long. (o)139.3817Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019989Metagenome / Metatranscriptome226Y
F051329Metagenome / Metatranscriptome144Y
F064893Metagenome / Metatranscriptome128Y
F076964Metagenome117Y
F089117Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243510_100021All Organisms → cellular organisms → Bacteria251235Open in IMG/M
Ga0243510_100051All Organisms → cellular organisms → Bacteria → Acidobacteria133354Open in IMG/M
Ga0243510_100205All Organisms → cellular organisms → Bacteria42252Open in IMG/M
Ga0243510_101539All Organisms → cellular organisms → Bacteria8991Open in IMG/M
Ga0243510_102036All Organisms → cellular organisms → Bacteria7137Open in IMG/M
Ga0243510_109409All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1926Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243510_100021Ga0243510_100021126F051329MPYMQVPKRSPRQEYRLKQRERIDAAPVIAKKFPRLKALKVTLEYFDATGSTKQGEMKCKLNVDHAKSVLWFACPGVECSCGDFDLSEALVKAVRGGLKVATGELHCQGTRQRGDREPVVCRTLLRYKLNLNYD
Ga0243510_100051Ga0243510_10005133F064893MPKIVRWEFLGSWLLFWVLCITVIGIPLAILYLLNGTVRIEHEVSDPERFVTEFRSGRLTRK
Ga0243510_100205Ga0243510_10020527F076964MTDDSVWLRPPYGQGEPQEFEAKPEILVPLMVAGWNQCPPPEKNEELKSNVDN
Ga0243510_101539Ga0243510_1015394F089117MNKSIGFQLIVYSLLLAGLSYLVHHLAPDLAQTTLVTGLVGGALCLVWGVRAAAGSESKALPILTLIPVSFVMLSQTVIVWTGGSEVVTGRRSAAVVLTVLLALSVGMLMRVAYAGLVFAGQPGSAVRGVGAKPGTTGKGAA
Ga0243510_102036Ga0243510_1020366F076964MTDTRVWLQPPYGLGEPKEFEAKPEILVPLMVAGWSQCPPPERNEELKSVVDN
Ga0243510_109409Ga0243510_1094091F019989MNTQNINQNTAAPSVTIAPRNPARGILNYVVTLTTFDDVRSYPCRSMESALKLAERFIIGVTKPRPAAPATEQPAPAAEPVAA

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