3300029389: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_3_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029389
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283156 | Ga0243995
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_3_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 204122158
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F088920	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243995_1001786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15661
Ga0243995_1002364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12558
Ga0243995_1018139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1821

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243995_1001786	Ga0243995_100178613	F088920	VSANLHHYPAFVAGLILHLILHFSQKVAIFAPKRAILLLFVPTLFFGFRAVFPLQASSKISGQTSLHQPWLSPYCLFKD
Ga0243995_1002364	Ga0243995_10023644	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFRENFSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0243995_1018139	Ga0243995_10181393	F026489	KSASDFDALEPRKRGYSPLLTPKRRATPEKTEDSRLFGVKIF