3300029359: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_11_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029359
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282996 | Ga0243835
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_11_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 214729136
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F044554	Metagenome	154	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F056682	Metagenome	137	Y
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076190	Metagenome	118	Y
F081354	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243835_1000075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	121422
Ga0243835_1000501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	41869
Ga0243835_1000837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31018
Ga0243835_1001035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	26801
Ga0243835_1001228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	23341
Ga0243835_1003664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8973
Ga0243835_1004389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7514
Ga0243835_1005040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	6481
Ga0243835_1006165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5193
Ga0243835_1008776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243835_1000075	Ga0243835_1000075117	F068855	VPTVEAQGPQARKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0243835_1000501	Ga0243835_10005011	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPAAAG
Ga0243835_1000837	Ga0243835_10008376	F097172	MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVVTFDNLQGTDDKSLKCFGGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDFVNTIPTTKIKFTTKLKKRQTYVFIIDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243835_1000837	Ga0243835_10008377	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTIFDNYKAEHPEYADAIDETYNDESEFVNKHPVDKDKFTTKLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLAAYSFDMNIEYRK
Ga0243835_1001035	Ga0243835_100103533	F052660	MCILRILPENTPDKIGQERAGTERTVVKSKIRLRIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSANALPGKSNS
Ga0243835_1001228	Ga0243835_100122814	F089053	MEGPRPDKFAFGVKLERVVDECRPVKGCIRKWLYIFANGQPELSTAEEVNVKSMEAFL
Ga0243835_1003664	Ga0243835_100366411	F076190	RSGGWNGRSSWARTAGGSITISVKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLYPYFQREPL
Ga0243835_1004389	Ga0243835_10043895	F026489	MRSARKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243835_1005040	Ga0243835_10050404	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTADTEMCIWPCFYHAPMCKGVLINMDDGTTLRIKPILNKEGEPELLITCVTEETVGEVYQRVSNYD
Ga0243835_1006165	Ga0243835_10061652	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSCLFGVKVF
Ga0243835_1008776	Ga0243835_10087763	F067845	MEHWKNLLVCLLAGVLALGCSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNHFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243835_1017960	Ga0243835_10179604	F081354	LSVRVNKKRWSLVRENQQSSALNFVKDFSSFFPESRRRSPLKKGAATENPLEYGKTEVQILFEPLLTAISSMELPKNFENKKLPNTLR
Ga0243835_1018563	Ga0243835_10185631	F081354	LSAKKALDLVRENQQSSAHNFVKDFSPIFPKSSRRSPLIKGAVTKILLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0243835_1029281	Ga0243835_10292811	F081354	LVRENQQSSAHNFVKDFSLIFLKFSRLCPLKKGAATENLLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0243835_1041553	Ga0243835_10415531	F055715	LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEIL
Ga0243835_1043664	Ga0243835_10436642	F044554	VLTGRFIPVLCAGIARLFPCRTEIARCLTLDFAISRYLFLYFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFHVL
Ga0243835_1048348	Ga0243835_10483482	F056682	MQSRAGKVANQSIRQGEIYSASFRVFPSKNHITFPIQELGKIHENQEVL
Ga0243835_1050564	Ga0243835_10505642	F074899	LFDPHRDPHGETSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSTEKP