3300029343: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_26_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029343
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282886 | Ga0243725
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_26_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 324179305
• Sequencing Scaffolds: 18
• Novel Protein Genes: 18
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F051935	Metagenome	143	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F068941	Metagenome	124	N
F070093	Metagenome	123	N
F076190	Metagenome	118	Y
F081354	Metagenome	114	Y
F087334	Metagenome	110	N
F089053	Metagenome	109	Y
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243725_1000766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	36824
Ga0243725_1002085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	17234
Ga0243725_1003786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10495
Ga0243725_1004666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	8649
Ga0243725_1008546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4905
Ga0243725_1008873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4755
Ga0243725_1013055	All Organisms → cellular organisms → Bacteria	3369
Ga0243725_1017038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2667
Ga0243725_1018047	Not Available	2535
Ga0243725_1019830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2334
Ga0243725_1020164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2299
Ga0243725_1028378	All Organisms → cellular organisms → Bacteria	1712
Ga0243725_1029271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1668
Ga0243725_1050940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1037
Ga0243725_1056284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	951
Ga0243725_1086657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	654
Ga0243725_1094429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	604
Ga0243725_1107716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243725_1000766	Ga0243725_10007662	F097172	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243725_1002085	Ga0243725_100208514	F056309	CLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSTVSFKDREAASLLID
Ga0243725_1003786	Ga0243725_10037863	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNVNVSVKISGNTVTFVGGSNVTGTLAPVDSKEKGIKKDITVKASKAGSTMSLYMDLTTMPNELKEESFIYELYYNDSTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG
Ga0243725_1004666	Ga0243725_10046669	F056309	KRTCLRRTPSLSVVPLLLGDSDSLSVSYGMKPEQEALSIVSFKD
Ga0243725_1008546	Ga0243725_10085464	F068941	MDNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMDLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0243725_1008873	Ga0243725_10088731	F089053	RCRILCRAKRALFGFDVKFGCVVDGCRLIKGCIRKWIYGFANGQPELSTAEEVNVKNMEAFL
Ga0243725_1013055	Ga0243725_10130554	F076190	TAGGSITISVKNVFTAASRVSGRVWSLARITVPNGLKSVKIRVEKPQNNSLYPYFQREPL
Ga0243725_1017038	Ga0243725_10170381	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLY
Ga0243725_1018047	Ga0243725_10180471	F059106	WKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0243725_1019830	Ga0243725_10198303	F062845	KKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA
Ga0243725_1020164	Ga0243725_10201643	F081354	LSVKKALDLVRENQQSSAHNFVKDFSPIFPKSSRRSPLIKGAVTKILLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNTLR
Ga0243725_1028378	Ga0243725_10283784	F070093	FESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNYADSIS
Ga0243725_1029271	Ga0243725_10292713	F097172	MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKHHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKIKFTTRLKKGQTYVF
Ga0243725_1050940	Ga0243725_10509401	F051935	ISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFGTISYYVEGYGTTYINMNYDRGLEFLIGAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
Ga0243725_1056284	Ga0243725_10562841	F026489	AEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243725_1086657	Ga0243725_10866572	F013656	MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYELXFYKIILKI
Ga0243725_1094429	Ga0243725_10944292	F081354	LVRQNQQSSAHNFVKDFSPIFLKTSRRSPLKKGAVTEIPLEYGKTEVQILFEPLQAAISSMELPKNFENKKL
Ga0243725_1107716	Ga0243725_11077162	F029444	MEVSEQLTGFELENLMSWTVSNLQRPFREDFSLQKSGIIAEKGSQIFGCRFVGFD