NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029339

3300029339: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_2_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029339 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133095 | Gp0281939 | Ga0242823
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_2_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size249548581
Sequencing Scaffolds28
Novel Protein Genes28
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena5
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium TF06-431
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F029444Metagenome188Y
F032286Metagenome / Metatranscriptome180Y
F044554Metagenome154N
F047125Metagenome / Metatranscriptome150N
F047126Metagenome150N
F055715Metagenome138N
F055775Metagenome138N
F056309Metagenome137N
F056682Metagenome137Y
F062845Metagenome130N
F067845Metagenome125N
F070093Metagenome123N
F071325Metagenome122N
F076190Metagenome118Y
F081453Metagenome114N
F087334Metagenome110N
F090513Metagenome108N
F090514Metagenome108N
F092227Metagenome107N
F105374Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242823_1000495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis65678Open in IMG/M
Ga0242823_1000522All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena62870Open in IMG/M
Ga0242823_1000731All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena49338Open in IMG/M
Ga0242823_1000802Not Available45845Open in IMG/M
Ga0242823_1000890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii41889Open in IMG/M
Ga0242823_1000959All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena39262Open in IMG/M
Ga0242823_1001116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii33784Open in IMG/M
Ga0242823_1001551All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena23653Open in IMG/M
Ga0242823_1001834All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales20115Open in IMG/M
Ga0242823_1002538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae14183Open in IMG/M
Ga0242823_1003120All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae11091Open in IMG/M
Ga0242823_1003298All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii10429Open in IMG/M
Ga0242823_1003304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii10411Open in IMG/M
Ga0242823_1004375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena7289Open in IMG/M
Ga0242823_1006443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4714Open in IMG/M
Ga0242823_1006463All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis4693Open in IMG/M
Ga0242823_1006492All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4669Open in IMG/M
Ga0242823_1007145All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4193Open in IMG/M
Ga0242823_1007248All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4138Open in IMG/M
Ga0242823_1007460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4017Open in IMG/M
Ga0242823_1007980All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3753Open in IMG/M
Ga0242823_1009007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis3296Open in IMG/M
Ga0242823_1012338All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2411Open in IMG/M
Ga0242823_1014674All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium TF06-432039Open in IMG/M
Ga0242823_1015137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1982Open in IMG/M
Ga0242823_1021412Not Available1431Open in IMG/M
Ga0242823_1032356All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes972Open in IMG/M
Ga0242823_1050489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae631Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242823_1000495Ga0242823_100049567F081453MSPFFLLAGDNIIEKHISANPVCGTNIRASELAVKGAPGRKCVQ
Ga0242823_1000522Ga0242823_10005221F056309LSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKDREAVSPLIN
Ga0242823_1000731Ga0242823_100073123F056309MWNAVRSTVKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIASFKD
Ga0242823_1000802Ga0242823_10008026F055775MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN
Ga0242823_1000890Ga0242823_100089038F092227MNDKKRKRILRVGCLILAFVFGLSLLGSLVMMLLV
Ga0242823_1000959Ga0242823_10009591F056309RTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALFIVSFKD
Ga0242823_1001116Ga0242823_100111636F067845MKHWKNLLVCLLAGVLALGMLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0242823_1001551Ga0242823_10015511F056309TPSLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD
Ga0242823_1001834Ga0242823_100183420F071325IVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFRPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0242823_1002538Ga0242823_10025387F047126VYLKTKKMTNISQTQAGFKSKSLGSFCRFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0242823_1003120Ga0242823_100312011F087334ASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ
Ga0242823_1003298Ga0242823_10032987F090514MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASNIF
Ga0242823_1003304Ga0242823_10033043F047125MDVVLLLMVLGVMLSGFWVADALDHIRKEIIRQEGKRRGWWS
Ga0242823_1004375Ga0242823_10043751F070093VSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPK
Ga0242823_1006443Ga0242823_10064431F047125MDVVLLLMVLGVMLSGFRAADALDHLRKEIIRQEGKRRGWWS
Ga0242823_1006463Ga0242823_10064635F090513MAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0242823_1006492Ga0242823_10064921F026489LTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLF
Ga0242823_1007145Ga0242823_10071453F062845MEKTPFILHEEFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCA
Ga0242823_1007248Ga0242823_10072486F032286MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNG
Ga0242823_1007460Ga0242823_10074601F076190GSITISVKNVFTAASRVSERVWPLVHITVPNGLKSVKIRVEKPQNNSLYPYFQREPL
Ga0242823_1007980Ga0242823_10079802F062845MEKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA
Ga0242823_1009007Ga0242823_10090072F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0242823_1012338Ga0242823_10123386F029444MEVSGQLTGFELEDLKFWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0242823_1014674Ga0242823_10146744F056682MQSRAGKVANQSIRQGEMYPASFREFPSKNHGTFSFQELGKIHENQEVL
Ga0242823_1015137Ga0242823_10151371F070093VSNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLSELNPKSN
Ga0242823_1021412Ga0242823_10214121F076190VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRV
Ga0242823_1032356Ga0242823_10323561F105374MKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKED
Ga0242823_1050489Ga0242823_10504892F055715MNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIR

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