3300029251: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93

Overview

Basic Information

• IMG/M Taxon OID: 3300029251
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193103 | Ga0167475
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 202175734
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F041208	Metagenome	160	N
F050793	Metagenome	145	N
F052660	Metagenome	142	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167475_100214	Not Available	85987
Ga0167475_103825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7251
Ga0167475_105624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5151
Ga0167475_106271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4673
Ga0167475_106357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4618
Ga0167475_110786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2865
Ga0167475_110963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2825
Ga0167475_111484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2707
Ga0167475_112173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2558
Ga0167475_112597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2482

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167475_100214	Ga0167475_10021455	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167475_100214	Ga0167475_10021471	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCSANQFLESISDFDKIIFVIITYMKSYFDFCKDYSKISLHVHLVQFDFTTSILIQSFYNYSHRDLSFSTKLESYVSDSEIELLQEKLDLIREEICKLMGIDPDLQKKGHEENYIFNLNIDSDNQIGFFLQATEL
Ga0167475_100214	Ga0167475_10021473	F060985	MSNIDEKAKNNFTIEMRIFENYEKVRHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDSRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKN
Ga0167475_100214	Ga0167475_10021474	F032312	MPKIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0167475_103825	Ga0167475_1038253	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKQDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVVQSVSLCAAIGSIVSAMRRKPPKPVAVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0167475_105624	Ga0167475_1056244	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGEVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQENYQDNKNLILFPDSPAPSACAFSLLASAHST
Ga0167475_106271	Ga0167475_1062713	F039198	MKFTVSEMQSKKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0167475_106357	Ga0167475_1063577	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMP
Ga0167475_110786	Ga0167475_1107863	F075480	MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDHLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSLGIQVDLTEADTSHLKSCEVQMECRVGVFGKDGKATQWQKEILAATITFK
Ga0167475_110963	Ga0167475_1109633	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPILNKEGDPELLIGCVTEETVGEVYQWVSNYDFDEPCAGNMPS
Ga0167475_111484	Ga0167475_1114842	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISLSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVMLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDVIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTNAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFAIPQRDMADDAYEVEVDDKDGKVT
Ga0167475_112173	Ga0167475_1121733	F074964	MITKKNVNKLQNAVIKENACNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVTVCSQMLSKVGDTFVKFSLYSKVYKDNKIDKEKGIEAKTADWCYDNVVYGGEYKSFGFSTAETLETKNSAKWLVKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0167475_112597	Ga0167475_1125973	F091068	MNEKSQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPAD
Ga0167475_121278	Ga0167475_1212782	F067845	MKHWKNLFVCLLAGVLALGVLTACSGLGSGNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAWLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0167475_123464	Ga0167475_1234642	F090515	ALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS
Ga0167475_126138	Ga0167475_1261382	F070133	LGLLMAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIXXXXXSGKSKKLMIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQYESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0167475_128373	Ga0167475_1283733	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTAALLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQNEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0167475_130119	Ga0167475_1301192	F068941	NNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0167475_131204	Ga0167475_1312041	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVKLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIAGKCDCDELLATKNFLYCYT
Ga0167475_144850	Ga0167475_1448501	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDE
Ga0167475_147148	Ga0167475_1471482	F082714	MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIKTLRKA
Ga0167475_158750	Ga0167475_1587501	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPAAAG