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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029237 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127425 | Gp0193114 | Ga0167477 |
| Sample Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021246-166 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 171327871 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 30 |
| Associated Families | 29 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 6 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Beijing, Peking Union Medical College | |||||||
| Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026489 | Metagenome | 197 | N |
| F042095 | Metagenome | 159 | N |
| F057001 | Metagenome | 137 | Y |
| F058555 | Metagenome | 135 | N |
| F067720 | Metagenome | 125 | Y |
| F067845 | Metagenome | 125 | N |
| F071325 | Metagenome | 122 | N |
| F074899 | Metagenome / Metatranscriptome | 119 | N |
| F075481 | Metagenome | 119 | N |
| F076189 | Metagenome | 118 | N |
| F076653 | Metagenome | 118 | N |
| F077313 | Metagenome | 117 | N |
| F078006 | Metagenome | 117 | N |
| F078693 | Metagenome | 116 | N |
| F080673 | Metagenome | 115 | N |
| F083451 | Metagenome | 113 | N |
| F083452 | Metagenome | 113 | N |
| F085718 | Metagenome | 111 | N |
| F087335 | Metagenome | 110 | N |
| F088914 | Metagenome | 109 | N |
| F089005 | Metagenome | 109 | N |
| F089053 | Metagenome | 109 | Y |
| F089590 | Metagenome | 109 | N |
| F089591 | Metagenome | 109 | N |
| F089592 | Metagenome | 109 | N |
| F090515 | Metagenome | 108 | N |
| F092227 | Metagenome | 107 | N |
| F093883 | Metagenome | 106 | N |
| F106193 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0167477_100056 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 88320 | Open in IMG/M |
| Ga0167477_100236 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 45146 | Open in IMG/M |
| Ga0167477_100244 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 44056 | Open in IMG/M |
| Ga0167477_100365 | Not Available | 34945 | Open in IMG/M |
| Ga0167477_100548 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 28064 | Open in IMG/M |
| Ga0167477_100897 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 19766 | Open in IMG/M |
| Ga0167477_100952 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 19169 | Open in IMG/M |
| Ga0167477_101326 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 15099 | Open in IMG/M |
| Ga0167477_101363 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 14755 | Open in IMG/M |
| Ga0167477_101486 | Not Available | 13932 | Open in IMG/M |
| Ga0167477_101512 | Not Available | 13722 | Open in IMG/M |
| Ga0167477_102194 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 10506 | Open in IMG/M |
| Ga0167477_102598 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 9026 | Open in IMG/M |
| Ga0167477_102959 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 8145 | Open in IMG/M |
| Ga0167477_103736 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 6782 | Open in IMG/M |
| Ga0167477_103830 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 6672 | Open in IMG/M |
| Ga0167477_104502 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 5797 | Open in IMG/M |
| Ga0167477_104966 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 5330 | Open in IMG/M |
| Ga0167477_124359 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1380 | Open in IMG/M |
| Ga0167477_125613 | Not Available | 1315 | Open in IMG/M |
| Ga0167477_131127 | Not Available | 1099 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0167477_100056 | Ga0167477_10005632 | F090515 | LQGTAPKRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS |
| Ga0167477_100236 | Ga0167477_10023621 | F074899 | MSGRKQWNKQAATSSFLGKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSTEKP |
| Ga0167477_100244 | Ga0167477_10024413 | F088914 | VGRILPVCNGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIVFSAWYAAKALEMDVK |
| Ga0167477_100365 | Ga0167477_10036531 | F077313 | MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLEKNNKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPAVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNINARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKSKKG |
| Ga0167477_100365 | Ga0167477_1003655 | F106193 | MMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP |
| Ga0167477_100548 | Ga0167477_10054831 | F078693 | MVLAPVRGEERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC |
| Ga0167477_100897 | Ga0167477_1008971 | F071325 | RFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNTFSKAFHPHAVRFPAAFLLVHRFYLAFGELLSYATAYL |
| Ga0167477_100952 | Ga0167477_10095216 | F083451 | MDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM |
| Ga0167477_100952 | Ga0167477_1009527 | F076653 | MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIEISSVLQTLVRLVENAKLIFDDQPGIHDMTMYNGFFLRDDFQSGKDYSLNLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFERMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRRDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYITLLTNNLK |
| Ga0167477_101326 | Ga0167477_10132617 | F087335 | MIELYFNDANLLPENREEEQYAEAALNNLLAGKMADTGMCIMPCFYDAPLHKGLLYHLDDGTTLRIRPILNEAGEPELLIRCVTEETVEEMMEGVKP |
| Ga0167477_101363 | Ga0167477_10136310 | F092227 | MNEQKRKCVLRIGCLVLAGVFVLSLLGSILMMLLL |
| Ga0167477_101486 | Ga0167477_10148610 | F089590 | MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS |
| Ga0167477_101486 | Ga0167477_10148611 | F075481 | MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKDVDPSTGERPVSSQTDAHIVIGRLDSTVTVDSLGIDKTITGVKDIDKKTDIEHKDVDDKKESRWPIVWIVAGILMILLVLVYILKKIKIL |
| Ga0167477_101486 | Ga0167477_1014868 | F042095 | MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAVYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQKWTIKPA |
| Ga0167477_101512 | Ga0167477_1015121 | F089591 | MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLKEVSHIDDPESTSFGLPDDYLWFSNIKGAFSYKGCEVGDFVMWEANNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK |
| Ga0167477_101512 | Ga0167477_1015122 | F089592 | MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFIDALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVGEGDKVNTEE |
| Ga0167477_101512 | Ga0167477_1015128 | F093883 | MRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE |
| Ga0167477_102194 | Ga0167477_1021945 | F089053 | MILCRAKRALFQFGSRNGCVVGGCRPAKGYIKKWVHESANGQPELSTAEEVNVKNMEAFL |
| Ga0167477_102598 | Ga0167477_1025983 | F026489 | METAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF |
| Ga0167477_102959 | Ga0167477_1029593 | F076189 | VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL |
| Ga0167477_103736 | Ga0167477_1037367 | F071325 | RDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHVLRFPATFLLVHRFYLDFEELLSCATAYL |
| Ga0167477_103830 | Ga0167477_1038302 | F085718 | MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRDINSQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVSYYVDKLEEDECFDELCEKIRVKRDRIYNIEIISLSNDEAAI |
| Ga0167477_104502 | Ga0167477_1045021 | F057001 | MPIQVPRVRANLMTNKELNKVQNEVKKASEKTLTGAVKAWCQIFKSGKEINEILKDNDIKVDKSIVPALVALARDKEVVIQLCKDILPRVDETFCAYKEIERIYFDKQDQDRNTKLSEDKVAEISITGKAYKRFGYNEPVEYEGGVYYEVFNGSDKRIIKCAVPIKRYTFTLIAKCVTYYLTHPKNER |
| Ga0167477_104502 | Ga0167477_10450213 | F078006 | MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILKRAAAELKGAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDALNGPLPRWCKAYGVYPKQYDNIDKWYNRDNYNKKLFKEI |
| Ga0167477_104502 | Ga0167477_1045028 | F080673 | MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDMIEILIANKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVLKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARML |
| Ga0167477_104966 | Ga0167477_1049666 | F083452 | MSGRVKIKIKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGTGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR |
| Ga0167477_107395 | Ga0167477_1073952 | F089005 | VLLGFDFKSCKNFLKTFKKCLTKSKQRSIIVLALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI |
| Ga0167477_124359 | Ga0167477_1243591 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDSTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNVFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR |
| Ga0167477_125613 | Ga0167477_1256133 | F067720 | MASTTYEHFVDTNKMYAAQEQFRHATKMVCGRFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSAARCAART |
| Ga0167477_131127 | Ga0167477_1311271 | F058555 | NTDIYPPILLRQFRINNKWATFTGYPSIRITCFVFTELVYSQQIKSSMGTKIRFLHIMKSNFDKILTERYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |