3300029203: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011703-95

Overview

Basic Information

• IMG/M Taxon OID: 3300029203
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192969 | Ga0168704
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011703-95
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129996450
• Sequencing Scaffolds: 24
• Novel Protein Genes: 29
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039147	Metagenome	164	N
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F045105	Metagenome	153	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F051935	Metagenome	143	N
F055739	Metagenome	138	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168704_100137	Not Available	86475
Ga0168704_100339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	34604
Ga0168704_100344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	34250
Ga0168704_100501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	24578
Ga0168704_100671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19251
Ga0168704_100765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	17342
Ga0168704_100777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17188
Ga0168704_100809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16699
Ga0168704_100858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15823
Ga0168704_101091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13320

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168704_100137	Ga0168704_10013717	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0168704_100137	Ga0168704_10013718	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHRFWHRVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKN
Ga0168704_100137	Ga0168704_10013720	F080163	MKTIKFLQESFETKERFQQEISFKYSYNQNTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFFL
Ga0168704_100137	Ga0168704_10013724	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILEFISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0168704_100137	Ga0168704_10013737	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0168704_100339	Ga0168704_10033920	F087336	MVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0168704_100344	Ga0168704_10034412	F087334	MASRYQFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFGYREKHQ
Ga0168704_100501	Ga0168704_1005011	F071325	IVFRDFPSRLRFHKFQYCSIFKVLLALLSNSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168704_100671	Ga0168704_1006718	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKQDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIVSTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0168704_100765	Ga0168704_1007651	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPYPL
Ga0168704_100777	Ga0168704_1007777	F059982	MRHMTRLLCLMLLFSLITFSCPLAEETDAPTGTPASTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVAEDAAATASPEV
Ga0168704_100809	Ga0168704_1008099	F072366	MLDILAIKADVYQLERQGKRLPIYRYLREVWKKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGKEITQDNVEQWKKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSDFDDAMTWYRDNGRKLLEAKNKTNN
Ga0168704_100858	Ga0168704_1008589	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSGEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAIASYIRRFADLNGFVKVADYAREEVTTFGDYAVAVTVQVMLDGTPYRFTMRLDMMAFTSVENANLHPAAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWGPQDGNG
Ga0168704_101091	Ga0168704_10109115	F077320	MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWENVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTPTPLPEWLADW
Ga0168704_101221	Ga0168704_10122110	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEKRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASSDFWKIAIRQPNAPSGQSIVYLELNGLTGALLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASDAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSQTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLLDVRDSDLSVVDSVQIPSFSALRASILLPVRVWNTLAEKLRVTIFYRDANTQPGIVYGMYASRIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDVPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRVMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0168704_101411	Ga0168704_1014119	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVQAPTQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVALVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0168704_101609	Ga0168704_1016091	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIAGESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLTMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALMSQVHQGEISLEEFVEEADKLIEGLEQ
Ga0168704_101634	Ga0168704_1016343	F082714	MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTFGNGFPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPGTPPSSCENFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIKTLRKAVEIRSVEAVERETLGRWAF
Ga0168704_101837	Ga0168704_1018377	F051934	MGLMRRLAAAALAAVLVLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQSTTLGGETLMFNQLAWLEFAIKAYNHLALPLQRVFLWLSPYAHTSAWEGVRQAIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEVQGDTVIIRRIQPDHSATMMTLTVKVIQVVEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWL
Ga0168704_103402	Ga0168704_1034023	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLNRTMRIVITAVLMALMLTAVGMAAARFFSVTDVHPAQDGTEGDYQAHYLALEERHDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAHYIREQAARHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVMDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGETGFTLNLSGEKGTE
Ga0168704_103407	Ga0168704_1034074	F057385	MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTAMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIREKALRATMKMSGQSDEDIDKAIEESKEQLSGNAEYTALMEAAANLSSMTEEQLMEELTQADTTAFMTMMNEILSGEEMAEVTEQPGDCDAAKSYVKVTVPPEKIVEMTKALLEMIHSVPSVGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPISFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYDGEDPVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
Ga0168704_103582	Ga0168704_1035822	F077319	MQENAVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCVWEMGAALTKGLYESETDLRGDVLMPGRMLEKPIPAADEKALRLLCRKLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFLSMMDEHSGD
Ga0168704_103850	Ga0168704_1038502	F073574	MLLPAAVRPYAADVDGTASRVRCAIVLNGSKELRIQLCGRLKRGLFGRNQLLADGNVLCVALHQPDGDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEELAAFANPDNMFTWVWLSLRCTRCHAVFRGDFTAD
Ga0168704_104078	Ga0168704_1040781	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTKIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0168704_105363	Ga0168704_1053633	F050793	MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEAFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0168704_107289	Ga0168704_1072893	F088920	VKPRKTTTSFFCFPHFFSFASARPHYYLAFGAGLILHIILHFSQKAAIFAPKRAILLLFVPTLFFAGLSVFFPQTSPKISGQTSLYQPWLSPYYLFKD
Ga0168704_107580	Ga0168704_1075801	F070093	LAEFCPFRIDPPMEPEQERLFKLYSGSGIHSLPELNPN
Ga0168704_114046	Ga0168704_1140462	F051935	MKRLLGLLMAVMVMMGGISCAVAENANPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGAISYYVEGYGTTYINMSYDRGLEFQIDVPVYSRFSYEVYPVEEHSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKIEE
Ga0168704_121314	Ga0168704_1213142	F042910	DGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSNDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC