3300029187: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002600-16

Overview

Basic Information

• IMG/M Taxon OID: 3300029187
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192934 | Ga0168669
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002600-16
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83118427
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F081453	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168669_100023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	203033
Ga0168669_100578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	21538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168669_100023	Ga0168669_10002366	F081453	MSPFFLLAGNNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0168669_100578	Ga0168669_10057811	F047125	MDVVLLLMVLGVMLSGFRAADALDHIRREIIRQEGKRRGWWS