Sample 3300029116

Overview

Basic Information
IMG/M Taxon OID	3300029116 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193089 \| Ga0168822
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021219-39
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	155366062
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F047126	Metagenome	150	N
F047755	Metagenome	149	Y
F068855	Metagenome	124	N
F082887	Metagenome / Metatranscriptome	113	Y
F084124	Metagenome	112	Y
F087334	Metagenome	110	N
F088920	Metagenome	109	Y
F105374	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F029444

Metagenome

188

F032286

Metagenome / Metatranscriptome

180

F047126

Metagenome

150

F047755

Metagenome

149

F068855

Metagenome

124

F082887

Metagenome / Metatranscriptome

113

F084124

Metagenome

112

F087334

Metagenome

110

F088920

Metagenome

109

F105374

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168822_100128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	103982	Open in IMG/M
Ga0168822_100373	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	51738	Open in IMG/M
Ga0168822_100722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	32372	Open in IMG/M
Ga0168822_100745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	31316	Open in IMG/M
Ga0168822_100858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	27774	Open in IMG/M
Ga0168822_101003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24479	Open in IMG/M
Ga0168822_101028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	23932	Open in IMG/M
Ga0168822_102487	All Organisms → cellular organisms → Bacteria	10052	Open in IMG/M
Ga0168822_102817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	8653	Open in IMG/M
Ga0168822_103247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7347	Open in IMG/M
Ga0168822_103353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7097	Open in IMG/M
Ga0168822_103876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	6070	Open in IMG/M
Ga0168822_104987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4573	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168822_100128

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

103982

Open in IMG/M

Ga0168822_100373

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis

51738

Open in IMG/M

Ga0168822_100722

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

32372

Open in IMG/M

Ga0168822_100745

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

31316

Open in IMG/M

Ga0168822_100858

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

27774

Open in IMG/M

Ga0168822_101003

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

24479

Open in IMG/M

Ga0168822_101028

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

23932

Open in IMG/M

Ga0168822_102487

All Organisms → cellular organisms → Bacteria

10052

Open in IMG/M

Ga0168822_102817

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

8653

Open in IMG/M

Ga0168822_103247

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7347

Open in IMG/M

Ga0168822_103353

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7097

Open in IMG/M

Ga0168822_103876

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

6070

Open in IMG/M

Ga0168822_104987

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

4573

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168822_100128	Ga0168822_10012846	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPVALVETDDIFNVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAVSQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC
Ga0168822_100373	Ga0168822_10037320	F105374	MKKRVVLLVALCIWKVVAAQTPYGEMSERFRPDALPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0168822_100722	Ga0168822_10072221	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ
Ga0168822_100745	Ga0168822_1007452	F026489	LTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKII
Ga0168822_100858	Ga0168822_1008586	F068855	VEAQGPQVRKSLAPQGLQAEKERENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0168822_101003	Ga0168822_1010033	F032286	VTPVRHRALIFDVRLFAGNTVDDALVTGGTFRFCRLMCPCVKRRNVKPDSKRHSLLDSALFHADNRTEQKTISPFSLALILTFDFAALSECRSCPEVRSRRFVPVGTLSLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNTDFHAYGQDRKRAGI
Ga0168822_101028	Ga0168822_1010281	F084124	SLFGGLNTTALAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKILWALPKPTSL
Ga0168822_102487	Ga0168822_1024878	F082887	MEKIKTIAKYLTNILAIVSALVAGINAVDGIAIPYAIQIVQIIAVVQGVIGTYLLGQKAISNKEE
Ga0168822_102817	Ga0168822_1028174	F084124	LLFGGLNATAKVFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFSNYVQARKQRGCLRLINCYIGRFLWALPKPAIFEKIE
Ga0168822_103247	Ga0168822_1032478	F029444	MEVSEQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF
Ga0168822_103353	Ga0168822_1033535	F047755	MDNDKVKYLIDMINDMDIKNKLRLAICMSQSERSGLIYNTKENYEKFDNMLKSIDEEYRTTLVNFGKYKLVMFAMAELMEIETTEQNKIALYLFNTLN
Ga0168822_103876	Ga0168822_1038761	F084124	KGNKHHFHSQRNALTMFLAFLFIMAFACFNKLSLSTQTAWMFAPDKLLYRKILWALPKPAIFEKIE
Ga0168822_104987	Ga0168822_1049875	F088920	VSANLHHYPAFWAGLILHLILHLILHFSQKVAIFAPKRAILLIFVPTLFFGFRAVFPLQASSKISGQTSLYQPWLSPQCLFKD

Scaffold ID

Protein ID

Family

Sequence

Ga0168822_100128

Ga0168822_10012846

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPVALVETDDIFNVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAVSQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC

Ga0168822_100373

Ga0168822_10037320

F105374

MKKRVVLLVALCIWKVVAAQTPYGEMSERFRPDALPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP

Ga0168822_100722

Ga0168822_10072221

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ

Ga0168822_100745

Ga0168822_1007452

F026489

LTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKII

Ga0168822_100858

Ga0168822_1008586

F068855

VEAQGPQVRKSLAPQGLQAEKERENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW

Ga0168822_101003

Ga0168822_1010033

F032286

VTPVRHRALIFDVRLFAGNTVDDALVTGGTFRFCRLMCPCVKRRNVKPDSKRHSLLDSALFHADNRTEQKTISPFSLALILTFDFAALSECRSCPEVRSRRFVPVGTLSLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNTDFHAYGQDRKRAGI

Ga0168822_101028

Ga0168822_1010281

F084124

SLFGGLNTTALAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKILWALPKPTSL

Ga0168822_102487

Ga0168822_1024878

F082887

MEKIKTIAKYLTNILAIVSALVAGINAVDGIAIPYAIQIVQIIAVVQGVIGTYLLGQKAISNKEE

Ga0168822_102817

Ga0168822_1028174

F084124

LLFGGLNATAKVFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFSNYVQARKQRGCLRLINCYIGRFLWALPKPAIFEKIE

Ga0168822_103247

Ga0168822_1032478

F029444

MEVSEQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF

Ga0168822_103353

Ga0168822_1033535

F047755

MDNDKVKYLIDMINDMDIKNKLRLAICMSQSERSGLIYNTKENYEKFDNMLKSIDEEYRTTLVNFGKYKLVMFAMAELMEIETTEQNKIALYLFNTLN

Ga0168822_103876

Ga0168822_1038761

F084124

KGNKHHFHSQRNALTMFLAFLFIMAFACFNKLSLSTQTAWMFAPDKLLYRKILWALPKPAIFEKIE

Ga0168822_104987

Ga0168822_1049875

F088920

VSANLHHYPAFWAGLILHLILHLILHFSQKVAIFAPKRAILLIFVPTLFFGFRAVFPLQASSKISGQTSLYQPWLSPQCLFKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029116: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021219-39

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences