3300029112: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021215-34

Overview

Basic Information

• IMG/M Taxon OID: 3300029112
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193085 | Ga0168820
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021215-34
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121872820
• Sequencing Scaffolds: 25
• Novel Protein Genes: 25
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F078822	Metagenome	116	N
F084124	Metagenome	112	Y
F087335	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168820_100276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	68102
Ga0168820_100346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	58271
Ga0168820_100376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	54551
Ga0168820_100441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	48472
Ga0168820_100501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	43966
Ga0168820_100626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	36365
Ga0168820_100729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	32571
Ga0168820_100736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	32356
Ga0168820_100861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	27922
Ga0168820_100895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	26817

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168820_100276	Ga0168820_10027642	F084124	LNKQAKAFARTTKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFITQTAWLFAPKKLLYRKILWALPKPAIFEKIE
Ga0168820_100346	Ga0168820_10034638	F087335	MLELYFNGGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0168820_100376	Ga0168820_10037650	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLKVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0168820_100441	Ga0168820_10044119	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGLLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0168820_100501	Ga0168820_1005014	F087336	MHCLLRGMVAELEQVPKAFRAASNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERGTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0168820_100626	Ga0168820_10062632	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLA
Ga0168820_100729	Ga0168820_1007292	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRFCT
Ga0168820_100736	Ga0168820_10073626	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0168820_100861	Ga0168820_10086111	F084124	LNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPDKLLYRKILWALPKAASL
Ga0168820_100895	Ga0168820_10089521	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168820_100998	Ga0168820_10099821	F067844	MNTLAAETASAWYLFLNRKLQTLPIYITQLSSHLPRPLMMGTQQVSAGAAVITPQHRSYRVPQG
Ga0168820_101100	Ga0168820_10110020	F084124	LNTTAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0168820_101224	Ga0168820_1012243	F090515	VTTCCKAGPKAALQGTAPKRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0168820_101275	Ga0168820_1012754	F026489	VEEDIAERCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168820_101352	Ga0168820_10135219	F087335	MIELYFNDANLLPENREEEQYAEAALNSILAGKTADVEMCIQPCFYNAPLHKGLLYNLDDGTTLRIRPILNEAGEPELLIRCVTEESVETVYQRGANYD
Ga0168820_101416	Ga0168820_1014163	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMTDDVVTAEAATKKVTSAYRYHLIGYDKKGYVMDGFSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSASKEKGEPRYKSFVKFKAPKTGKYVFTLDNLQGTDDKSLKCFSGSIRKPVKNEKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYVDVIEETYIDCTDYVNKYPVDKIKSTTKLKKGHTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0168820_101466	Ga0168820_1014661	F078822	KAFLPHAVRFPATFLLVHRFYLAFEELLSCATAYL
Ga0168820_101626	Ga0168820_1016266	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0168820_101772	Ga0168820_10177211	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY
Ga0168820_102285	Ga0168820_1022852	F090515	VTTCCKAGPKAALQGTAPKRVACLEFAGGEKRKTNIAADYAVKIPAFTALLCRHIGSIRTFLKS
Ga0168820_102466	Ga0168820_1024665	F097172	MKKNVFKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHLEGCDKNGYPVDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGNPEYESYVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKYPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLXXXXXXXXXXXXXHST
Ga0168820_103078	Ga0168820_1030781	F059106	MHAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0168820_105188	Ga0168820_1051882	F089053	MEGPRLDKFGFGSRNGCVVGGCRPEKGYITKRIHGFADGMPKLSTAKEATVKNMEVFL
Ga0168820_107205	Ga0168820_1072055	F026489	LTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKI
Ga0168820_108013	Ga0168820_1080132	F047125	MDIVLLLAVLGVMLGGFRIADRMDELRKEILRQEGNRRGWWW