3300029106: Human fecal microbial communities from mother in Denmark - 172_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029106
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193525 | Ga0169216
• Sample Name: Human fecal microbial communities from mother in Denmark - 172_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 172446799
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F047755	Metagenome	149	Y
F056309	Metagenome	137	N
F073656	Metagenome	120	N
F076190	Metagenome	118	Y
F081453	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169216_100248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	50491
Ga0169216_100702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	23753
Ga0169216_101461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	14030
Ga0169216_101585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13255
Ga0169216_103831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6617
Ga0169216_104624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5728
Ga0169216_105091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter	5279
Ga0169216_139292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	835

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169216_100248	Ga0169216_10024819	F047755	MEQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSGLIYNTKEYYEKFDSMLKDIDEEYKTTLINFRKYKIVMFAMTKLMEMETIEQNKVALYLFNNIF
Ga0169216_100702	Ga0169216_1007021	F056309	TPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0169216_101461	Ga0169216_1014616	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0169216_101585	Ga0169216_1015851	F076190	TAGGSITISVKNVFTAASRVSGRVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL
Ga0169216_103831	Ga0169216_1038315	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILFSLLRYFHILSKKLQKTC
Ga0169216_104624	Ga0169216_1046244	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEETIRNFEKVEQEGALTPPYRGKVYFRSRLRGK
Ga0169216_105091	Ga0169216_1050913	F029444	MGVSEQLTGFELEDLMSWTVSNLQCPFREDFSLEKSGIIAEKGSQIFGHRFVGFDRPKKAAPFFNF
Ga0169216_139292	Ga0169216_1392922	F081453	MSPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ