3300029097: Human fecal microbial communities from infant at 12 months in Denmark - 179_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029097
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193526 | Ga0169217
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 179_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76110784
• Sequencing Scaffolds: 3
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides nordii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N
F098313	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169217_100119	Not Available	85583
Ga0169217_100184	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	63381
Ga0169217_106304	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides nordii	1758

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169217_100119	Ga0169217_100119101	F064725	MGLQTVEVFVIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFAKAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI
Ga0169217_100119	Ga0169217_10011911	F078005	MKKSEFVKALEKIIDMVKTEDDGFEYGGKVIFYKEDDDDYEISAMNIEMNLEVEANVMASMDDRAFTCLMSEVYKQKAVKAIMMEKDDDEDNR
Ga0169217_100119	Ga0169217_10011931	F083451	MDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDVFSKEAEMVNETDRDKIEEFNKSLAHE
Ga0169217_100119	Ga0169217_10011969	F098313	MREQKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
Ga0169217_100119	Ga0169217_10011987	F050794	MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEYNGIIKKLMKEAEKLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLDAITEREFKDSFVRMDSRNMEIKKLTLSDIKKVVTMMEDGYDYALYMTEECDC
Ga0169217_100119	Ga0169217_10011990	F077313	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTRAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQNHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDVGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKSGPNGQIIADPQGDILSYRILYPAQEVTKGKKG
Ga0169217_100184	Ga0169217_10018419	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTADSLGIDKTRNDIKNMDNKIDIKSKDVDDKDESKWPTAIIFISILGILVVLFVLLKRLGLIK
Ga0169217_100184	Ga0169217_10018420	F089590	MKDKDMIERVGGLWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0169217_100184	Ga0169217_10018422	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLNLSSCYLDRYIKEFNDLPKLTSLNIAPGPSDMWNYFDINIIPSFEVDKINTSIEVFAFLDDWMNGERRTGWNDDNMSGRGLEHLTNFVAVNSNSLRMDKLPDYIYEMRAITGFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA
Ga0169217_100184	Ga0169217_10018430	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE
Ga0169217_100184	Ga0169217_10018442	F058555	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAKSLVCPVDYKPVTNKNGKKVTAIKYSNKKDNIRGSGMVIGKKCKQVVAYLTIVNIQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALPDIMIYSYKAKKNEDMKDIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVANTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0169217_100184	Ga0169217_10018460	F083452	MSGRIKIKPKNKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0169217_100184	Ga0169217_10018478	F078006	MDNVLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCHIKEEATFDLETALDVLNGPLPSWCKAYGVYPKQYKDIDGWYNNNNYNKKLFKEI
Ga0169217_106304	Ga0169217_1063041	F051936	GKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK