3300029093: Human fecal microbial communities from infant at 12 months in Denmark - 18_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029093
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193535 | Ga0169226
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 18_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 77710043
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F059106	Metagenome	134	N
F067720	Metagenome	125	Y
F099269	Metagenome	103	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169226_100849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	20794
Ga0169226_101046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	15510
Ga0169226_101599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8139
Ga0169226_105920	Not Available	1072
Ga0169226_108008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169226_100849	Ga0169226_10084911	F067720	MSSTTYGHIGDLTDMFAVQEQFRHATKMVCDFVDLNKIDHFAVIGNMVRNAGQLPQPFWLGAACGGGSCSAARCAAKT
Ga0169226_101046	Ga0169226_10104621	F099451	MAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIKELYNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKDK
Ga0169226_101599	Ga0169226_1015991	F029444	MEASGQLTGFEREDLMSWTASNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0169226_105920	Ga0169226_1059202	F059106	TTHVIVWKIRGILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVHV
Ga0169226_108008	Ga0169226_1080082	F099269	LSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV