Sample 3300029052

Overview

Basic Information
IMG/M Taxon OID	3300029052 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193745 \| Ga0169758
Sample Name	Human fecal microbial communities from mother in Denmark - 536_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	142904217
Sequencing Scaffolds	11
Novel Protein Genes	16
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F071325	Metagenome	122	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F090513	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F101355	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032286

Metagenome / Metatranscriptome

180

F032312

Metagenome / Metatranscriptome

180

F059106

Metagenome

134

F060985

Metagenome / Metatranscriptome

132

F062845

Metagenome

130

F064817

Metagenome

128

F067845

Metagenome

125

F071325

Metagenome

122

F087334

Metagenome

110

F087336

Metagenome

110

F088914

Metagenome

109

F090513

Metagenome

108

F094005

Metagenome / Metatranscriptome

106

F101355

Metagenome

102

F101357

Metagenome / Metatranscriptome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169758_100029	Not Available	84798	Open in IMG/M
Ga0169758_113020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2107	Open in IMG/M
Ga0169758_118383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1582	Open in IMG/M
Ga0169758_121016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1410	Open in IMG/M
Ga0169758_122846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1311	Open in IMG/M
Ga0169758_124278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1244	Open in IMG/M
Ga0169758_131347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	981	Open in IMG/M
Ga0169758_133060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	934	Open in IMG/M
Ga0169758_135142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	883	Open in IMG/M
Ga0169758_147131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	659	Open in IMG/M
Ga0169758_149455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	629	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169758_100029

Not Available

84798

Open in IMG/M

Ga0169758_113020

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2107

Open in IMG/M

Ga0169758_118383

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1582

Open in IMG/M

Ga0169758_121016

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

1410

Open in IMG/M

Ga0169758_122846

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

1311

Open in IMG/M

Ga0169758_124278

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

1244

Open in IMG/M

Ga0169758_131347

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

981

Open in IMG/M

Ga0169758_133060

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

934

Open in IMG/M

Ga0169758_135142

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

883

Open in IMG/M

Ga0169758_147131

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

659

Open in IMG/M

Ga0169758_149455

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

629

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169758_100029	Ga0169758_100029101	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTSDTSKGTADALVNFAMNFTDGEANIKSITINGISSNIMQITFT
Ga0169758_100029	Ga0169758_100029103	F064817	MLDIMNIKNLFNRFRKQEPELSYSLNLIYLEDTKIVFNPNIQCAKDLENYLSDYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGRSSMVITKEKYQAAKDLVPVHKVSDRFKVPEYITEVFTDIWYKCQGYMDTDHANLEDILELMHYNWLKEFESFVFKRNYDTDMLFLNHSLTYILDQAEEEGRRICIQNIIERNINQENQDENETI
Ga0169758_100029	Ga0169758_10002988	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0169758_100029	Ga0169758_10002990	F032312	MSKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0169758_100029	Ga0169758_10002991	F060985	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTLIDKIDREDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169758_100029	Ga0169758_10002998	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDSFCNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0169758_113020	Ga0169758_1130203	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDEMSDTVHSKSCV
Ga0169758_118383	Ga0169758_1183831	F067845	MKHWKNLLVCLLAGVLALGCSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNHFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0169758_121016	Ga0169758_1210161	F071325	RDFPSRLRFHKFQYCSIFKVLLALLLDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0169758_122846	Ga0169758_1228462	F088914	VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIAFFAWYAAKALEMDVK
Ga0169758_124278	Ga0169758_1242781	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILFYPFRSSPLLAITFLYHPKDFFMYRAAALFEYREKHQ
Ga0169758_131347	Ga0169758_1313471	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLALIFTFVFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQGRRKGRNLKGGHHYAAKTH
Ga0169758_133060	Ga0169758_1330601	F087336	VAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPPTSKQKRAPQEVNSQSALSESNQLINP
Ga0169758_135142	Ga0169758_1351421	F059106	LLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0169758_147131	Ga0169758_1471312	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQNIGNKNGTKAVLQGWAA
Ga0169758_149455	Ga0169758_1494551	F101355	MAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFHKKLLPYVLFSFFKIYLKKIDFFQNIA

Scaffold ID

Protein ID

Family

Sequence

Ga0169758_100029

Ga0169758_100029101

F105375

MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTSDTSKGTADALVNFAMNFTDGEANIKSITINGISSNIMQITFT

Ga0169758_100029

Ga0169758_100029103

F064817

MLDIMNIKNLFNRFRKQEPELSYSLNLIYLEDTKIVFNPNIQCAKDLENYLSDYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGRSSMVITKEKYQAAKDLVPVHKVSDRFKVPEYITEVFTDIWYKCQGYMDTDHANLEDILELMHYNWLKEFESFVFKRNYDTDMLFLNHSLTYILDQAEEEGRRICIQNIIERNINQENQDENETI

Ga0169758_100029

Ga0169758_10002988

F094005

MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0169758_100029

Ga0169758_10002990

F032312

MSKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0169758_100029

Ga0169758_10002991

F060985

MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTLIDKIDREDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD

Ga0169758_100029

Ga0169758_10002998

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDSFCNYSNASNIHYEGGKFPSMLTIQLFNLEF

Ga0169758_113020

Ga0169758_1130203

F062845

MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDEMSDTVHSKSCV

Ga0169758_118383

Ga0169758_1183831

F067845

MKHWKNLLVCLLAGVLALGCSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNHFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR

Ga0169758_121016

Ga0169758_1210161

F071325

RDFPSRLRFHKFQYCSIFKVLLALLLDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL

Ga0169758_122846

Ga0169758_1228462

F088914

VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIAFFAWYAAKALEMDVK

Ga0169758_124278

Ga0169758_1242781

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILFYPFRSSPLLAITFLYHPKDFFMYRAAALFEYREKHQ

Ga0169758_131347

Ga0169758_1313471

F032286

VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLALIFTFVFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQGRRKGRNLKGGHHYAAKTH

Ga0169758_133060

Ga0169758_1330601

F087336

VAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPPTSKQKRAPQEVNSQSALSESNQLINP

Ga0169758_135142

Ga0169758_1351421

F059106

LLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV

Ga0169758_147131

Ga0169758_1471312

F090513

MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQNIGNKNGTKAVLQGWAA

Ga0169758_149455

Ga0169758_1494551

F101355

MAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFHKKLLPYVLFSFFKIYLKKIDFFQNIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029052: Human fecal microbial communities from mother in Denmark - 536_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences