3300029050: Human fecal microbial communities from mother in Denmark - 276_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029050
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193623 | Ga0169629
• Sample Name: Human fecal microbial communities from mother in Denmark - 276_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 155339999
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F055715	Metagenome	138	N
F071325	Metagenome	122	N
F076190	Metagenome	118	Y
F087334	Metagenome	110	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F089053	Metagenome	109	Y
F090513	Metagenome	108	N
F090515	Metagenome	108	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169629_101187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17820
Ga0169629_102329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9215
Ga0169629_102761	All Organisms → cellular organisms → Bacteria	7937
Ga0169629_103907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5803
Ga0169629_105274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4404
Ga0169629_105558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4204
Ga0169629_106019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3943
Ga0169629_107632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3200
Ga0169629_111773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2150
Ga0169629_125286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	994
Ga0169629_137955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	628
Ga0169629_138323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	622

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169629_101187	Ga0169629_1011871	F055715	LTKANEFDKINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0169629_102329	Ga0169629_1023295	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0169629_102761	Ga0169629_1027615	F088921	LGAIIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANK
Ga0169629_103907	Ga0169629_1039073	F087334	MASRYQFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0169629_105274	Ga0169629_1052742	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0169629_105558	Ga0169629_1055584	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELMSCATAYL
Ga0169629_106019	Ga0169629_1060192	F047125	MDVALLLVVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS
Ga0169629_107632	Ga0169629_1076322	F090515	VITCYKVGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0169629_111773	Ga0169629_1117733	F044554	SPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169629_125286	Ga0169629_1252861	F089053	MILCRAKRALFAFSVKLERVVDGCRPTKGCIKKWIHGSANGQPELSTAEEVNVKNMEAFL
Ga0169629_137955	Ga0169629_1379552	F076190	TISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKTQNNSLYPYFQREPL
Ga0169629_138323	Ga0169629_1383231	F099269	GVLLSVQVGESLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV