3300029042: Human fecal microbial communities from mother in Denmark - 39_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029042
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193695 | Ga0169701
• Sample Name: Human fecal microbial communities from mother in Denmark - 39_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 155103478
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F047755	Metagenome	149	Y
F059106	Metagenome	134	N
F067844	Metagenome	125	N
F068811	Metagenome	124	N
F076190	Metagenome	118	Y
F078693	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169701_100167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	67383
Ga0169701_100314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	46689
Ga0169701_100512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	34950
Ga0169701_101634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	12775
Ga0169701_102338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	8936
Ga0169701_104267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5044
Ga0169701_105470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4040
Ga0169701_112967	All Organisms → Viruses → Predicted Viral	1836
Ga0169701_114524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1670
Ga0169701_123007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1125

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169701_100167	Ga0169701_10016765	F097172	MCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCFGGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYQRDFVNTIPTAKIKFTTKLKKGHTYVFIIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0169701_100314	Ga0169701_10031427	F081453	MYPFFLLAGENIIGKHTLANPVCGTNIKAPEPAVKGTPQKQLRIP
Ga0169701_100512	Ga0169701_1005127	F013656	MSKTYKEPNKSETETTINVLYSEKMISIYTNKVGLQKQLNKLIGEPTKEYKFKRSIVGSMWEIPLDDKIRISRLVLKANIFEL
Ga0169701_101634	Ga0169701_1016342	F097172	MKKNVLKKLMCVVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPASYSKTSFYKDLNSLPAVKIGRTTINVPAVTSNVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPIKEGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGHTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
Ga0169701_102338	Ga0169701_1023388	F032286	MVKWVCQIVTPVRHRALVFDARLFAGNAADDTLVTGGTFRFCRLICLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALISTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRIYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKGRKFEGRTPLCSQSSPFRNGLKTCA
Ga0169701_104267	Ga0169701_1042677	F047755	MEQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSGRIYNTKEYYEKFDSMLKDIDEEYRTTFINFGKYKLVMFAMAKLMEMETTEKNKVALYLFNNIKIQ
Ga0169701_105470	Ga0169701_1054708	F039198	MQITNTEIQGTKYVQIYLTEEELQKKGTKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC
Ga0169701_112967	Ga0169701_1129672	F059106	HAIVWKIRVILLQIFVWIVDLKVRERLTEYLKEDIKYHQVIIEVLV
Ga0169701_114524	Ga0169701_1145242	F088921	LEAAKKIAVKTSALGATIRLYKIGAGKNNFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMWSKS
Ga0169701_123007	Ga0169701_1230071	F076190	ASRVSGRVWSLVRITVPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0169701_127654	Ga0169701_1276542	F067844	FVQSHMNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0169701_129528	Ga0169701_1295282	F068811	MDQDGSEHNIGSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0169701_129646	Ga0169701_1296462	F081354	LSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNTLRRLAFSPFHL
Ga0169701_129897	Ga0169701_1298972	F026592	RRTVCQNRLRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0169701_153314	Ga0169701_1533142	F078693	MVLALVRGAERFFIKANCSLLMSKENQKSTSDFDALDPRERGCSPLSDPEGEVETEKS