Sample 3300029040

Overview

Basic Information
IMG/M Taxon OID	3300029040 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193688 \| Ga0169694
Sample Name	Human fecal microbial communities from infant at 12 months in Denmark - 39_12M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	116822182
Sequencing Scaffolds	12
Novel Protein Genes	17
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. Marseille-P2398	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F068811	Metagenome	124	N
F080163	Metagenome	115	N
F081453	Metagenome	114	N
F084124	Metagenome	112	Y
F089053	Metagenome	109	Y
F089054	Metagenome	109	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F044555

Metagenome / Metatranscriptome

154

F047125

Metagenome / Metatranscriptome

150

F059106

Metagenome

134

F060985

Metagenome / Metatranscriptome

132

F062845

Metagenome

130

F064817

Metagenome

128

F068811

Metagenome

124

F080163

Metagenome

115

F081453

Metagenome

114

F084124

Metagenome

112

F089053

Metagenome

109

F089054

Metagenome

109

F094005

Metagenome / Metatranscriptome

106

F101357

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169694_100177	Not Available	85244	Open in IMG/M
Ga0169694_100179	Not Available	84934	Open in IMG/M
Ga0169694_100272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	63705	Open in IMG/M
Ga0169694_100331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	55613	Open in IMG/M
Ga0169694_100538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	37385	Open in IMG/M
Ga0169694_101594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	11974	Open in IMG/M
Ga0169694_102345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. Marseille-P2398	7121	Open in IMG/M
Ga0169694_104250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3313	Open in IMG/M
Ga0169694_109099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1474	Open in IMG/M
Ga0169694_113906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	977	Open in IMG/M
Ga0169694_116075	Not Available	844	Open in IMG/M
Ga0169694_127954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	512	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169694_100177

Not Available

85244

Open in IMG/M

Ga0169694_100179

Not Available

84934

Open in IMG/M

Ga0169694_100272

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

63705

Open in IMG/M

Ga0169694_100331

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

55613

Open in IMG/M

Ga0169694_100538

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis

37385

Open in IMG/M

Ga0169694_101594

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

11974

Open in IMG/M

Ga0169694_102345

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. Marseille-P2398

7121

Open in IMG/M

Ga0169694_104250

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3313

Open in IMG/M

Ga0169694_109099

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1474

Open in IMG/M

Ga0169694_113906

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

977

Open in IMG/M

Ga0169694_116075

Not Available

844

Open in IMG/M

Ga0169694_127954

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

512

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169694_100177	Ga0169694_10017714	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLETIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0169694_100177	Ga0169694_10017716	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169694_100177	Ga0169694_10017717	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINRRNIKDFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICELIGIDPNLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0169694_100177	Ga0169694_10017721	F044555	MKTTNPSSRITISQNGNPILTCKVYKEPNYILSMSNEEILELISGLNYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEIDPYLQDILQNPEDLISLSQHHKR
Ga0169694_100177	Ga0169694_10017728	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGNFPSMLTIQLFNLEF
Ga0169694_100177	Ga0169694_10017733	F064817	MNIKNLFNRFRKSKESKLSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFFNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETI
Ga0169694_100179	Ga0169694_10017970	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP
Ga0169694_100272	Ga0169694_1002725	F084124	LNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRKILWALPKPASL
Ga0169694_100331	Ga0169694_10033144	F084124	LNTTAKAFARATKGNKHHFHSQRIALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF
Ga0169694_100538	Ga0169694_10053827	F081453	MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ
Ga0169694_101594	Ga0169694_10159413	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCV
Ga0169694_102345	Ga0169694_1023455	F059106	WKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0169694_104250	Ga0169694_1042503	F047125	MDVVLLLMVLGVMLSGFRAADALDHIRREIIRQEGKRRDWWS
Ga0169694_109099	Ga0169694_1090993	F089053	MEGSRPDKFAFGVRIGRVVDGCRPAKGCVKKWLYGFANGQPELSTVKEANGKNMEAFV
Ga0169694_113906	Ga0169694_1139062	F026489	SASDFDALEPRKRGCSPLLTPKKWAPPEKTEDSRLFGVKIF
Ga0169694_116075	Ga0169694_1160751	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEILRQEGKRRGW
Ga0169694_127954	Ga0169694_1279541	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI

Scaffold ID

Protein ID

Family

Sequence

Ga0169694_100177

Ga0169694_10017714

F094005

MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLETIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0169694_100177

Ga0169694_10017716

F060985

MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD

Ga0169694_100177

Ga0169694_10017717

F080163

MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINRRNIKDFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICELIGIDPNLQKKGHEENYIFNLNIDSDNQIGFLLQATEL

Ga0169694_100177

Ga0169694_10017721

F044555

MKTTNPSSRITISQNGNPILTCKVYKEPNYILSMSNEEILELISGLNYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEIDPYLQDILQNPEDLISLSQHHKR

Ga0169694_100177

Ga0169694_10017728

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGNFPSMLTIQLFNLEF

Ga0169694_100177

Ga0169694_10017733

F064817

MNIKNLFNRFRKSKESKLSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFFNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETI

Ga0169694_100179

Ga0169694_10017970

F089054

MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP

Ga0169694_100272

Ga0169694_1002725

F084124

LNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRKILWALPKPASL

Ga0169694_100331

Ga0169694_10033144

F084124

LNTTAKAFARATKGNKHHFHSQRIALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF

Ga0169694_100538

Ga0169694_10053827

F081453

MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ

Ga0169694_101594

Ga0169694_10159413

F062845

MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCV

Ga0169694_102345

Ga0169694_1023455

F059106

WKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV

Ga0169694_104250

Ga0169694_1042503

F047125

MDVVLLLMVLGVMLSGFRAADALDHIRREIIRQEGKRRDWWS

Ga0169694_109099

Ga0169694_1090993

F089053

MEGSRPDKFAFGVRIGRVVDGCRPAKGCVKKWLYGFANGQPELSTVKEANGKNMEAFV

Ga0169694_113906

Ga0169694_1139062

F026489

SASDFDALEPRKRGCSPLLTPKKWAPPEKTEDSRLFGVKIF

Ga0169694_116075

Ga0169694_1160751

F047125

MDVVLLLMVLGVMLSGFRAADALDHMRKEILRQEGKRRGW

Ga0169694_127954

Ga0169694_1279541

F068811

MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029040: Human fecal microbial communities from infant at 12 months in Denmark - 39_12M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences