3300029015: Human fecal microbial communities from infant at 12 months in Denmark - 338_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029015
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193644 | Ga0169650
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 338_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102113441
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F067720	Metagenome	125	Y
F078693	Metagenome	116	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169650_100224	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56111
Ga0169650_107259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2368
Ga0169650_110496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1622
Ga0169650_126178	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169650_100224	Ga0169650_10022469	F067720	MTSTTYRHLGDVNKMYAAQEQFRDLTKMVCARFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSHSLSASVARA
Ga0169650_107259	Ga0169650_1072592	F078693	MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0169650_110496	Ga0169650_1104962	F047125	MDVALLLMVLGVMSSGFRAADALDHMREEIIRQEGKRRGWWS
Ga0169650_126178	Ga0169650_1261781	F089053	MEGPRPDKFTFGVRIGRVVYECRTVKGCIRKWIYRSANGQPELSTAEEATVKNMEAFL