Sample 3300029013

Overview

Basic Information
IMG/M Taxon OID	3300029013 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193592 \| Ga0169598
Sample Name	Human fecal microbial communities from infant at 12 months in Denmark - 26_12M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	98118804
Sequencing Scaffolds	9
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F047125	Metagenome / Metatranscriptome	150	N
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F064817	Metagenome	128	N
F067844	Metagenome	125	N
F078004	Metagenome	117	N
F080163	Metagenome	115	N
F089005	Metagenome	109	N
F089054	Metagenome	109	N
F092227	Metagenome	107	N
F092228	Metagenome	107	N
F094005	Metagenome / Metatranscriptome	106	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F047125

Metagenome / Metatranscriptome

150

F051936

Metagenome

143

F055775

Metagenome

138

F064817

Metagenome

128

F067844

Metagenome

125

F078004

Metagenome

117

F080163

Metagenome

115

F089005

Metagenome

109

F089054

Metagenome

109

F092227

Metagenome

107

F092228

Metagenome

107

F094005

Metagenome / Metatranscriptome

106

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169598_100058	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	166054	Open in IMG/M
Ga0169598_100124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	110710	Open in IMG/M
Ga0169598_100387	Not Available	45579	Open in IMG/M
Ga0169598_100682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	23959	Open in IMG/M
Ga0169598_100905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	17340	Open in IMG/M
Ga0169598_100938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16576	Open in IMG/M
Ga0169598_101455	Not Available	10202	Open in IMG/M
Ga0169598_102816	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	5227	Open in IMG/M
Ga0169598_103414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4293	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169598_100058

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

166054

Open in IMG/M

Ga0169598_100124

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

110710

Open in IMG/M

Ga0169598_100387

Not Available

45579

Open in IMG/M

Ga0169598_100682

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

23959

Open in IMG/M

Ga0169598_100905

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

17340

Open in IMG/M

Ga0169598_100938

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

16576

Open in IMG/M

Ga0169598_101455

Not Available

10202

Open in IMG/M

Ga0169598_102816

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides

5227

Open in IMG/M

Ga0169598_103414

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

4293

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169598_100058	Ga0169598_100058175	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQYNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169598_100058	Ga0169598_100058177	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIIQITFTV
Ga0169598_100058	Ga0169598_100058184	F080163	MKTIKFLQESFETKEKFQQEISFKYSYNRNTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINNFDKILFVIIIYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESKVLDSENELLQEKLDLIREEICKLMGIDPDLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0169598_100058	Ga0169598_100058185	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0169598_100058	Ga0169598_100058186	F094005	MKKEVIKLKEGNSVIYQDKTIMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0169598_100124	Ga0169598_10012429	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTSYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNEIRYVTVCKDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0169598_100387	Ga0169598_10038751	F055775	MAQIAQQDNLVIEVTTTAAALDDVTKKKLIECIEGGTITDVILVTKEAEKEISHARVVGWLVVTTGNSPKYTIDIINANSGMVTVIELN
Ga0169598_100682	Ga0169598_10068210	F047125	MDVALLLMVLGVMLSGFRAADALDHMRREIIRQEGKRRGWWS
Ga0169598_100905	Ga0169598_10090519	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKDYSEMYTKKHQEL
Ga0169598_100938	Ga0169598_1009382	F092227	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV
Ga0169598_101455	Ga0169598_1014551	F089054	MLTSGKFLVSFEVPGPLPDTTEGFCEEMNVVYRTEELNTYLRYPKQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP
Ga0169598_102816	Ga0169598_1028164	F051936	MKQEGTGQVLFFPLALRGKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK
Ga0169598_103414	Ga0169598_1034149	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAV
Ga0169598_106619	Ga0169598_1066191	F078004	RRIQLPALLSAVSEHLSSWNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF

Scaffold ID

Protein ID

Family

Sequence

Ga0169598_100058

Ga0169598_100058175

F064817

MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQYNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

Ga0169598_100058

Ga0169598_100058177

F105375

MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIIQITFTV

Ga0169598_100058

Ga0169598_100058184

F080163

MKTIKFLQESFETKEKFQQEISFKYSYNRNTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINNFDKILFVIIIYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESKVLDSENELLQEKLDLIREEICKLMGIDPDLQKKGHEENYIFNLNIDSDNQIGFLLQATEL

Ga0169598_100058

Ga0169598_100058185

F032312

MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0169598_100058

Ga0169598_100058186

F094005

MKKEVIKLKEGNSVIYQDKTIMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0169598_100124

Ga0169598_10012429

F092228

MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTSYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNEIRYVTVCKDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS

Ga0169598_100387

Ga0169598_10038751

F055775

MAQIAQQDNLVIEVTTTAAALDDVTKKKLIECIEGGTITDVILVTKEAEKEISHARVVGWLVVTTGNSPKYTIDIINANSGMVTVIELN

Ga0169598_100682

Ga0169598_10068210

F047125

MDVALLLMVLGVMLSGFRAADALDHMRREIIRQEGKRRGWWS

Ga0169598_100905

Ga0169598_10090519

F089005

LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKDYSEMYTKKHQEL

Ga0169598_100938

Ga0169598_1009382

F092227

MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV

Ga0169598_101455

Ga0169598_1014551

F089054

MLTSGKFLVSFEVPGPLPDTTEGFCEEMNVVYRTEELNTYLRYPKQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP

Ga0169598_102816

Ga0169598_1028164

F051936

MKQEGTGQVLFFPLALRGKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK

Ga0169598_103414

Ga0169598_1034149

F067844

MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAV

Ga0169598_106619

Ga0169598_1066191

F078004

RRIQLPALLSAVSEHLSSWNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029013: Human fecal microbial communities from infant at 12 months in Denmark - 26_12M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences