 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028847 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321314 | Ga0307327 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ala2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 36696249 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 25 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F028541 | Metagenome / Metatranscriptome | 191 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F047076 | Metagenome / Metatranscriptome | 150 | N |
| F047698 | Metagenome / Metatranscriptome | 149 | N |
| F051952 | Metatranscriptome | 143 | N |
| F061870 | Metagenome / Metatranscriptome | 131 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F064746 | Metagenome / Metatranscriptome | 128 | N |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070166 | Metatranscriptome | 123 | N |
| F074914 | Metagenome / Metatranscriptome | 119 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| F101223 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307327_100406 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 3571 | Open in IMG/M |
| Ga0307327_102197 | Not Available | 1862 | Open in IMG/M |
| Ga0307327_102737 | Not Available | 1678 | Open in IMG/M |
| Ga0307327_104325 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1347 | Open in IMG/M |
| Ga0307327_106029 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1134 | Open in IMG/M |
| Ga0307327_106085 | Not Available | 1128 | Open in IMG/M |
| Ga0307327_106270 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1109 | Open in IMG/M |
| Ga0307327_106550 | All Organisms → Viruses → environmental samples → uncultured virus | 1082 | Open in IMG/M |
| Ga0307327_106697 | Not Available | 1070 | Open in IMG/M |
| Ga0307327_108232 | Not Available | 955 | Open in IMG/M |
| Ga0307327_108516 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium | 937 | Open in IMG/M |
| Ga0307327_109316 | Not Available | 888 | Open in IMG/M |
| Ga0307327_110938 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 810 | Open in IMG/M |
| Ga0307327_111196 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 800 | Open in IMG/M |
| Ga0307327_111935 | All Organisms → cellular organisms → Bacteria | 771 | Open in IMG/M |
| Ga0307327_112255 | Not Available | 758 | Open in IMG/M |
| Ga0307327_113017 | Not Available | 733 | Open in IMG/M |
| Ga0307327_115427 | Not Available | 662 | Open in IMG/M |
| Ga0307327_115740 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 655 | Open in IMG/M |
| Ga0307327_115964 | Not Available | 649 | Open in IMG/M |
| Ga0307327_119473 | All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | 577 | Open in IMG/M |
| Ga0307327_119699 | Not Available | 573 | Open in IMG/M |
| Ga0307327_122872 | Not Available | 524 | Open in IMG/M |
| Ga0307327_122924 | All Organisms → Viruses → environmental samples → uncultured virus | 523 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307327_100406 | Ga0307327_1004065 | F093911 | MRLYDAYKNGEITRTEYLAYLDFGYKPNDSVFLTQNRSTEMVTISYLSMGSNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI |
| Ga0307327_102197 | Ga0307327_1021972 | F047076 | MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQNAVKIDSVKDTSGDDIYWEVKHRKLLIYDSNKELITDATIGNHKLEIEYWVRISKATKLSFPTDDDIESNPNIIEEWNELIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF |
| Ga0307327_102737 | Ga0307327_1027371 | F082734 | RRVSHRHLFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSNRLKLTQKEEKDAQTN |
| Ga0307327_104325 | Ga0307327_1043251 | F031111 | KTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPTAYNFSCYYPKNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFS |
| Ga0307327_106029 | Ga0307327_1060292 | F068879 | FLTKEDSLVVGGAACPGSRRGLPPGVTVFANARIN |
| Ga0307327_106085 | Ga0307327_1060852 | F099361 | TDSISFLIANSGNQKIYHPVSELKADILADVEADAAFQDIIIKGILGNVAAPVLATESTIIKNSNDPTIAIEITKNTFIEGDSENAGNWIIDFGMTTLAFNTITKVSATEINITTTGKAEVGTIRILALKDCFDAPIVDSTVLEIEVQESGE |
| Ga0307327_106270 | Ga0307327_1062701 | F028541 | MNEQERLKLINRLKTARTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPGSVPEKHPLGLPGGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA |
| Ga0307327_106550 | Ga0307327_1065501 | F017318 | VNRRSSQNKYPVNMRSPTAASPLKFQRTVEGAFDINCDGINPSVGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK |
| Ga0307327_106697 | Ga0307327_1066971 | F101223 | MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVILDLQPEMDLETFSSIKRNTIDYAIKQAEEAHAKAKAVKAENSKIPID |
| Ga0307327_108232 | Ga0307327_1082321 | F062800 | QTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV |
| Ga0307327_108370 | Ga0307327_1083701 | F020914 | KYGFAIDQILSEDQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307327_108516 | Ga0307327_1085162 | F031111 | KKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLCKPKLTFS |
| Ga0307327_109316 | Ga0307327_1093162 | F020363 | EPLLALTFGGMCCWRRFGVARVFALVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL |
| Ga0307327_110938 | Ga0307327_1109381 | F068879 | NRVTKEEGFVAGATACPGCRRGLPPGVTVFANAKIN |
| Ga0307327_111196 | Ga0307327_1111962 | F070158 | SSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY |
| Ga0307327_111935 | Ga0307327_1119352 | F061870 | MKRRIQKLESLTSWKSLPDASEYIQVWAIDPDQDEAEKWFETRDGARVTDPKTIARLTAYYSEAVRRGTVNVTARFDDYDDPEDTTGTDT |
| Ga0307327_112255 | Ga0307327_1122551 | F025291 | NKQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKAIQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307327_113017 | Ga0307327_1130171 | F070165 | MRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307327_115427 | Ga0307327_1154271 | F051952 | MPKNPRQTIAPDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEV |
| Ga0307327_115740 | Ga0307327_1157401 | F064746 | MNKIIWMALILLLGVFAIGGMSSTNGNDSAKNVTIDGYTFEGDFDDKWTNGYGDTETYKPANLEDIQFGIPDGAYDWTGAENYNAFRYRSGEPSGSITKYGWAHIFVLKPDDDLSYSSSIEMLRHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVQGELITSEDYPAFINDNSQGAIAFFLDDGKVCVIDAFTTNNFGMSAWDIIDSITVT |
| Ga0307327_115964 | Ga0307327_1159641 | F070166 | NIDNYVVQIHKRTKRITLQRFLVSKIAYGKDFSLIELAALFHNQLWLQAKCSTDVQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQNMEAQLRNSIFTTWRKSQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTNKEIISRIKRTIQVKEAIKRI |
| Ga0307327_119473 | Ga0307327_1194731 | F074914 | SCAALHRIELLDPQECDREVFKMEIERARAIAYLVKTVSEIIAKNEMENRIAALEAAILQEKAS |
| Ga0307327_119699 | Ga0307327_1196991 | F047698 | VQMQQATAIVGVLIGFLILTQIGIFVCDAMIGASSVNESSDLYEAQEKAIDTFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGRQGGY |
| Ga0307327_122872 | Ga0307327_1228721 | F099361 | NQKIYHPVSEFKADILADVEADETLQDIIIQGVLSKLAAPVLTTESTIIENDNDPTITIEITKNTFADTVSEDVDNWIIDLGATELAIDNILWKSATEMRIATTGTAKVGTIRILALKDCFDAPIVDSNVLEIKVRKT |
| Ga0307327_122924 | Ga0307327_1229241 | F017318 | RGATRRVTRNKFPQHNMFSPLQAKPLKFERTVEGLYDISCDGINPSVGTWNFSLNDLPSYTEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVDVQFNSAIDPVGNTVTNVSDVLQYRTLKGTAINKIHKRSLVPAYLMDGIVPCACYISCTSPSSNLWGVVYGIAPTGTA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |