 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028846 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321313 | Ga0307326 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ala1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 31540652 |
| Sequencing Scaffolds | 19 |
| Novel Protein Genes | 19 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales | 1 |
| Not Available | 11 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F030486 | Metagenome / Metatranscriptome | 185 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F047076 | Metagenome / Metatranscriptome | 150 | N |
| F051952 | Metatranscriptome | 143 | N |
| F056642 | Metagenome / Metatranscriptome | 137 | Y |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F095527 | Metagenome / Metatranscriptome | 105 | N |
| F098317 | Metagenome / Metatranscriptome | 104 | Y |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| F101223 | Metagenome / Metatranscriptome | 102 | N |
| F103316 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307326_102233 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1673 | Open in IMG/M |
| Ga0307326_102835 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | 1486 | Open in IMG/M |
| Ga0307326_105413 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales | 1089 | Open in IMG/M |
| Ga0307326_105787 | Not Available | 1048 | Open in IMG/M |
| Ga0307326_107274 | Not Available | 925 | Open in IMG/M |
| Ga0307326_108062 | All Organisms → Viruses → environmental samples → uncultured virus | 872 | Open in IMG/M |
| Ga0307326_108378 | Not Available | 854 | Open in IMG/M |
| Ga0307326_110424 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 753 | Open in IMG/M |
| Ga0307326_111150 | Not Available | 725 | Open in IMG/M |
| Ga0307326_111663 | Not Available | 707 | Open in IMG/M |
| Ga0307326_112885 | Not Available | 666 | Open in IMG/M |
| Ga0307326_114041 | Not Available | 633 | Open in IMG/M |
| Ga0307326_117547 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 555 | Open in IMG/M |
| Ga0307326_117601 | Not Available | 554 | Open in IMG/M |
| Ga0307326_118352 | Not Available | 541 | Open in IMG/M |
| Ga0307326_119227 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 526 | Open in IMG/M |
| Ga0307326_119838 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 516 | Open in IMG/M |
| Ga0307326_120973 | Not Available | 500 | Open in IMG/M |
| Ga0307326_120992 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307326_102233 | Ga0307326_1022332 | F095527 | SILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMTYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL |
| Ga0307326_102835 | Ga0307326_1028353 | F067770 | MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKKANK |
| Ga0307326_105413 | Ga0307326_1054133 | F030486 | ANNVLLAPLRGGACFCTRDAMQDYAVITLYSRWQKP |
| Ga0307326_105787 | Ga0307326_1057872 | F101223 | MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESEGENCCSCESENADTENPAKYIIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTLDYVIKQAQEAQAKEKAMKAENSKTHPDVSHISYG |
| Ga0307326_107274 | Ga0307326_1072741 | F051952 | TLVRYFLSKIVYTDEVVTLEETCILFLSFERMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQERLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307326_108062 | Ga0307326_1080621 | F017318 | NPSLGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK |
| Ga0307326_108378 | Ga0307326_1083782 | F047076 | MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNSVYQYEDLRILDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETIGNHNLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF |
| Ga0307326_110424 | Ga0307326_1104241 | F070158 | MADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDS |
| Ga0307326_111150 | Ga0307326_1111501 | F025291 | IFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307326_111663 | Ga0307326_1116631 | F059033 | MAITTANLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVIDVTPNQPIPIVTDT |
| Ga0307326_112885 | Ga0307326_1128852 | F098317 | EMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF |
| Ga0307326_114041 | Ga0307326_1140411 | F062800 | LSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307326_117547 | Ga0307326_1175472 | F031111 | EKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFCCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL |
| Ga0307326_117601 | Ga0307326_1176011 | F103316 | KAMHRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNETLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYK |
| Ga0307326_118352 | Ga0307326_1183521 | F070165 | TKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMLDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV |
| Ga0307326_119227 | Ga0307326_1192271 | F056642 | KLINSYAQPENQIKQEIYIPPEITVLEITLEKGFATSSASGTEDWGSLTW |
| Ga0307326_119838 | Ga0307326_1198381 | F077342 | KMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIDQVFDISAQYFLLYSPTYCRNAGNGIFIVSIPFWRMQHIAERENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTIDEPAREQRREILNPTRIF |
| Ga0307326_120973 | Ga0307326_1209731 | F070165 | RRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307326_120992 | Ga0307326_1209921 | F099361 | LFYAQEVIMNIKNTDSISFLIANSGNQKIYHPVSELKADILADVEADETLQTIISDKVLADVETDETLQDIIIQGVLGKLAAPVLATESTIIENSNDPAIFIDVTKNTFIEGDSENAGNWIIDFGRTNLAFDTITKLSATEMRITTTGTAKVGTIRILALKDCFDA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |