3300028730: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028730
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321350 | Ga0307363
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96431879
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020914	Metagenome / Metatranscriptome	221	N
F026449	Metagenome / Metatranscriptome	198	Y
F047076	Metagenome / Metatranscriptome	150	N
F048337	Metagenome / Metatranscriptome	148	N
F077342	Metagenome / Metatranscriptome	117	N
F082739	Metagenome / Metatranscriptome	113	N
F088355	Metagenome / Metatranscriptome	109	Y
F092888	Metagenome / Metatranscriptome	107	Y
F097412	Metagenome / Metatranscriptome	104	N
F102634	Metagenome / Metatranscriptome	101	Y
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307363_1004521	All Organisms → cellular organisms → Bacteria	2864
Ga0307363_1005391	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	2600
Ga0307363_1012240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	1553
Ga0307363_1013992	Not Available	1418
Ga0307363_1014696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1370
Ga0307363_1017096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232
Ga0307363_1026802	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	885
Ga0307363_1027206	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	875
Ga0307363_1027850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859
Ga0307363_1037247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688
Ga0307363_1039054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	663
Ga0307363_1039653	Not Available	655
Ga0307363_1040125	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	649
Ga0307363_1042367	Not Available	622
Ga0307363_1047379	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	572
Ga0307363_1047446	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307363_1004521	Ga0307363_10045217	F048337	MIEKQVTFEGILREDEEQSNETARLQDYQIAAITKDATYVLIDALPYDFIVTNAFYRITEAFDGTINLGTAAAPGRIIADADFVKTVGKRSTAKSIQIDAGKAIRLVLGPGTTGKIEVHVTGFLLMPTLL
Ga0307363_1005391	Ga0307363_10053912	F077342	MARTLNEFIVSTGNYVYEITDAEMAGVDLSDFNVAVLLHCVLSDESEKDFIVFSKGNIDQVFDINMQYFLLYSPTYCRNAGNGIFIVSIPFWRMQHVAENLDSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPRTSVVDEPAEEQRREILNPKRIF
Ga0307363_1012240	Ga0307363_10122401	F088355	MKNLTNKINIFAGQKGQLVIAILTIALFVLAAGAPNATIGIGR
Ga0307363_1012240	Ga0307363_10122403	F088355	MKNITNKISVFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0307363_1013992	Ga0307363_10139921	F047076	MTNGELLALAQLIIPELTAKAFVQFYNIAFEKISREVRLITTVLKPTSVSQYRDLLEQKAVKIDSVKDTSGDDIYWEVKHRKLLIYDSNRELITNETVGNHNLEIEYWESISGAIKPFPTDTVSEIDPNAIEEWNKLIPDISDVEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNS
Ga0307363_1014696	Ga0307363_10146962	F048337	MARKENNKMIEKQVTFEGILREEEEQSNDTARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRIKEAFDGTINLGTDVAPGRIIADADFVKTVGKKSTGKSLMLDAGKPILLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307363_1014820	Ga0307363_10148202	F020914	MAIYQKYGFAIDQILSENQALPNATSEDSTNTIKLDAVADDGLHIVVCAASTIVQLTSAATLEIRPTIGATDGAVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTS
Ga0307363_1017096	Ga0307363_10170961	F097412	MNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307363_1026802	Ga0307363_10268022	F092888	MPGPASARGNYGMQPRNNKTIPTTSEGSQVHEQGKLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSIILIQAMATGQTAWNHAAFEPASSLVLAVVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRDATNYEAGMLPGHVSALY
Ga0307363_1027206	Ga0307363_10272061	F082739	TNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTNPFVNEATVNGEPANATVEFV
Ga0307363_1027850	Ga0307363_10278503	F048337	MTLIEETVTFEGILRREEMPDTETARLQDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTDAAPGRIIADADFVKTVGKRSVAKSIQLNAGKPIQLVLGPGTTGKIEVHVTGFLLM
Ga0307363_1037247	Ga0307363_10372471	F097412	PNARRKKMSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPSKGA
Ga0307363_1039054	Ga0307363_10390543	F088355	MKSTINKIGVFASKKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0307363_1039653	Ga0307363_10396531	F047076	MKNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQNAVKIDSVKDASGDDIFWEVRHRKLLIYDSNKELITDATIGNHKLEIEYWVRISKATKSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNS
Ga0307363_1040125	Ga0307363_10401251	F082739	TNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVNFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGMVASTNPGQLYGVITVNNTTATTFTVTDAFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVVSAAVDNDANTVSLEIALDEPLATDEELMIYLKFQTALKKMLPDSNTFVNEATVNGETANATIEFV
Ga0307363_1042367	Ga0307363_10423672	F026449	VSYSISKSMMISRRQGGGNEAYYTYVEEADDAANKDSA
Ga0307363_1047379	Ga0307363_10473791	F082739	MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFAPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVMLATVDNDANTVSLEIALDEPLATD
Ga0307363_1047446	Ga0307363_10474461	F102634	QQQEAQVMETTIKKRIEIEGYGMVDGEFIQSDQGWFCREVNGVRWDFREWGAQAPMETPEEAAV
Ga0307363_1053420	Ga0307363_10534201	F105254	ATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKVPPTGEVYYSYRVTDCIGITGDFNQVRDIYIHCDGNFASEWGLDAGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQAGGTPGTTGHSIDDSSNGHPYYKDETEKVRNFDTCLANSPLLIDSGPYTDDFYSKAWVLS