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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028725 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321329 | Ga0307342 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 46664981 |
| Sequencing Scaffolds | 19 |
| Novel Protein Genes | 22 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 2 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022205 | Metatranscriptome | 215 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F040648 | Metagenome / Metatranscriptome | 161 | Y |
| F047076 | Metagenome / Metatranscriptome | 150 | N |
| F049017 | Metagenome / Metatranscriptome | 147 | N |
| F051952 | Metatranscriptome | 143 | N |
| F054063 | Metagenome / Metatranscriptome | 140 | N |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067893 | Metagenome / Metatranscriptome | 125 | Y |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F078674 | Metagenome / Metatranscriptome | 116 | Y |
| F080199 | Metagenome / Metatranscriptome | 115 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F084407 | Metagenome / Metatranscriptome | 112 | N |
| F092121 | Metagenome / Metatranscriptome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307342_100780 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 3255 | Open in IMG/M |
| Ga0307342_101440 | All Organisms → Viruses → Predicted Viral | 2590 | Open in IMG/M |
| Ga0307342_105487 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1389 | Open in IMG/M |
| Ga0307342_112509 | Not Available | 873 | Open in IMG/M |
| Ga0307342_114983 | Not Available | 781 | Open in IMG/M |
| Ga0307342_115115 | Not Available | 776 | Open in IMG/M |
| Ga0307342_116914 | Not Available | 724 | Open in IMG/M |
| Ga0307342_117614 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 706 | Open in IMG/M |
| Ga0307342_119080 | Not Available | 673 | Open in IMG/M |
| Ga0307342_119636 | Not Available | 661 | Open in IMG/M |
| Ga0307342_119760 | Not Available | 658 | Open in IMG/M |
| Ga0307342_120324 | Not Available | 647 | Open in IMG/M |
| Ga0307342_120372 | Not Available | 646 | Open in IMG/M |
| Ga0307342_120816 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium | 638 | Open in IMG/M |
| Ga0307342_120838 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 638 | Open in IMG/M |
| Ga0307342_124109 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 583 | Open in IMG/M |
| Ga0307342_126217 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 553 | Open in IMG/M |
| Ga0307342_127698 | Not Available | 536 | Open in IMG/M |
| Ga0307342_128376 | Not Available | 528 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307342_100780 | Ga0307342_1007804 | F082734 | AKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN |
| Ga0307342_101440 | Ga0307342_1014406 | F080199 | KIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIISQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL |
| Ga0307342_104842 | Ga0307342_1048423 | F020914 | MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLSGEMICQFNIPAKLIGSARYLKLTYVTSANESD |
| Ga0307342_105487 | Ga0307342_1054873 | F070167 | MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSQAGLLKLLGL |
| Ga0307342_111234 | Ga0307342_1112341 | F020914 | KRWIIMAIYQKYGFAIDQILSENQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307342_112509 | Ga0307342_1125092 | F047076 | KISREVRLLTQILKPISVYQYEDLRKFDIEFDIVKIDSVKDTSRDDVYWEERHRKLLIYDSNKELITNETVGNHNLEIEYWVSISGAITPFPTNTGIEIDPNAIEEWNKSIPSISDVEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF |
| Ga0307342_114983 | Ga0307342_1149831 | F062800 | QLQSVTSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307342_115115 | Ga0307342_1151152 | F067893 | VYPRYTMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR |
| Ga0307342_116914 | Ga0307342_1169142 | F059033 | MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAQKGAPTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIP |
| Ga0307342_117614 | Ga0307342_1176142 | F031111 | MKNQVLFSIFKNKTRRKKEKSRFFIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP |
| Ga0307342_119080 | Ga0307342_1190802 | F049017 | MAIAKYSKTCGKNVPGNSRLFFVEAGNISSITVTSNEISAITMSDTSKFREFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNANAWLSGYTFKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELPFDTTLNASIIGVTATFIDYN |
| Ga0307342_119636 | Ga0307342_1196361 | F040648 | INNEEALLEIEPMLDTAREGVAALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKEALKGATQEQIDRAYAILSGQEAVEDVPGEGDEE |
| Ga0307342_119636 | Ga0307342_1196362 | F036251 | MSAKERQTVLFSDTGVTTPIDTTERVSLSDGAVFVAQRIEIRPSNIYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGENGALTHDVMCAVKSVLSVNTGRRFF |
| Ga0307342_119760 | Ga0307342_1197602 | F084407 | MPTSGNVLALLPVLTPYTPTSPQFDLLYPYALDEFKGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDSDESP |
| Ga0307342_120324 | Ga0307342_1203241 | F062800 | TNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307342_120372 | Ga0307342_1203721 | F051952 | WRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGTEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSQRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSKTDYLEFLFRNFNTNRVQLFPQKKPGEKLHSSSN |
| Ga0307342_120816 | Ga0307342_1208162 | F031111 | EKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLCKPKLTFS |
| Ga0307342_120838 | Ga0307342_1208381 | F092121 | MPKHFYTLLIIPHKKKDSVKKFLATPRHFRLATTLLVALFCFLGYCAVDYLTIKLEQMELFNLRRLTSTQQEQIDTLEGKITFFERKLAELKQVDEKIRTMAMDLAGKPRKASRKETAPAREQALGVGGPMPAGETGADKLTSLNRHMDRLLEDASA |
| Ga0307342_124109 | Ga0307342_1241091 | F054063 | WLYGVENTANIFFDKPKLFYRRWGTVAIKPFIESWNDLGMEFQKGLSPYNTAKMFVDALVKAEFLNNTGFEMNGDDNNFTFKAIECPYKSHCTRLVTEGKEIACLRAITLLGAMEFNKEGESLKYLYKFDFNKESPCLVSFEKFKD |
| Ga0307342_126217 | Ga0307342_1262171 | F070158 | QEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEES |
| Ga0307342_127698 | Ga0307342_1276981 | F078674 | NKKHMEALKKAIENRRAPLEVEGKAGGRIISLRVSEKMEQILEEQAQEWGMSISDTLRSILNFYFLPPLLLEAWENKVEELVAIDTECRGMDVTDNTAPTQAQRIEEVFIDSEEAEEYAQFITDLWEKSLKYFETLREEASTMNRIAGERLLKTAEALRKAGKKLEKTKVEV |
| Ga0307342_128376 | Ga0307342_1283761 | F022205 | ATNPTTTITANVMGLPLNRPCRPHAIEVRYAHSAPVGVRFRLYAGNSEEIYVSPALVAGPAPQVFRASLPANTDFAIYDSAATIMDFAGTATWAVRLIMAHKENTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |