3300028323: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300028323
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116313 | Ga0208280
• Sample Name: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3767990
• Sequencing Scaffolds: 7
• Novel Protein Genes: 17
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	1
Not Available	5
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5563
  • Long. (^o): 78.1877
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F008667	Metagenome	330	N
F020827	Metagenome	222	Y
F027372	Metagenome	195	Y
F032101	Metagenome	181	Y
F046097	Metagenome	152	Y
F051583	Metagenome	144	N
F058558	Metagenome	135	Y
F072888	Metagenome	121	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208280_1038	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	12422
Ga0208280_1056	Not Available	5133
Ga0208280_1062	All Organisms → Viruses → Predicted Viral	4685
Ga0208280_1068	Not Available	3799
Ga0208280_1078	Not Available	2763
Ga0208280_1229	Not Available	638
Ga0208280_1260	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208280_1038	Ga0208280_103813	F072888	MKAGMGGTQHNGPVQQMTFDVAIEREVNGENELTDYENVSKAINIPSMEKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN
Ga0208280_1056	Ga0208280_105610	F006455	MYQQVKPPAGWTEIEPEFEFQHQTFQRRRDGLVVAIELERMSFYNVVTLPENYYQEDQVIDCIEIGVEPEDAAETAREWMEQNNRQ
Ga0208280_1056	Ga0208280_10565	F058558	MNINDKFQHRAFKAVVKTDDHDVAENEIMAGLSSVGVNDDEYRMLWTRDNFNTSSHNHVAAIFIVPTEYMADLPTLVERGNAISINEVELQSVDA
Ga0208280_1056	Ga0208280_10566	F020827	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTVFDVLPVVKNIEPVEKPDHL
Ga0208280_1056	Ga0208280_10567	F027372	MSDEIIVSSTEALYDDYANLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYKLYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAKIGREYAPTDMFAPDEHYEIPTDSAQYSNNIAPQLRQLAGYEDGTGKGTYNTLSTDIGYYIHKEDVLPAFREAYHSEAINRQ
Ga0208280_1056	Ga0208280_10568	F006455	MNQQVKPPAGWAEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSHNIVTLPENYYQDNQVIDYVEVGLKPENAAETAHEWMEQNNRQ
Ga0208280_1056	Ga0208280_10569	F027372	MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCLTIEKIGEKAAERAAEIGRDYAPTDMFAPDEHFEIPTDSAQYVNIIAPQLQQLAGYAPYDSTPTDIGYYIHKEDVLPAFREAYYSEAINRQ
Ga0208280_1062	Ga0208280_106210	F027372	MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVINDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYESYDPELRFRLRMTEELGGFADTNCLTIEEIGAKAAERAAEIGRDYAPTDMFAPDEHYEIPTDSAQYVNDIAPQLQQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYHSEAINREI
Ga0208280_1062	Ga0208280_106211	F006455	MNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIERDGRRSHNIVTLPENYYQDNKIIDCIRAGVEPEDAAETAHEWMEQNNRQ
Ga0208280_1062	Ga0208280_106212	F020827	MDGAKQPTVKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLPDGTMITKLTVTAFDVLPVVKNIEPVEKPDHL
Ga0208280_1062	Ga0208280_10624	F051583	MTPHVPLTVGRSAPEGTRTNMDYTNPEDAANIDEPTRQQEIGLLSGLVDGNFVCVNHRGFLVNRTDNGSIELSRDGDVLGGRYYVTENNFAGLIEWLNAKVALYGETA
Ga0208280_1062	Ga0208280_10629	F006455	MNQQVNPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVTLPENYYQDNRVFDFIEVGVEPEDAAETAREWMEQNNRR
Ga0208280_1068	Ga0208280_10681	F006455	MNQQVKPPAGWAEIEPEFDHQQQTFQRRRDGLVLAIERDGRRSHNIVTLPENYYQNNKIIDCIRAGIEPEEVGETAREWMEQNNRQ
Ga0208280_1078	Ga0208280_10781	F032101	MSNQIEDDVIEQLVNEGANFEAALCVNSAIVGDLLIGELDSWNVGICEVKKDDEDLLVYGENGHLVKRVNTDVWTTSTLFEDTEVKDLAKIADKINSAIASECGEL
Ga0208280_1078	Ga0208280_10783	F046097	MSNQIEAVEIEAQNVLVDREGDMYSLRVIDTNSKVHRLESAALTLNDYAFATSGCEISEHGKVVTVKRLETGSRYIHLSTE
Ga0208280_1229	Ga0208280_12291	F008667	MTPGSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTVDDVRAMRLNVHGRTDKHQAKVFGVSASMVY
Ga0208280_1260	Ga0208280_12602	F051583	MTPHVPLTVGRSAPEGTKPNMDYTNPEDVANIDEPTRQQEIGLLSGLVDGTFVCVNHRGFLVNRTDKGSIELSRDGEVLGGRYYVTENNFAGLVEWLNAKVALYGETA