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Sample 3300028249
3300028249: Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.0 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300028249 Open in IMG/M GOLD Reference Gs0132855 | Gp0267201 | Ga0232079 Sample Name Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.0 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 40946204 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 2 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa Type Engineered Taxonomy Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) na → na → na
Location Information
Location USA: New York Coordinates Lat. (o ) 42.4447 Long. (o ) -76.485 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F028541 Metagenome / Metatranscriptome 191 Y F039694 Metagenome / Metatranscriptome 163 Y F041848 Metagenome / Metatranscriptome 159 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0232079_108267 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 1169 Open in IMG/M Ga0232079_114175 Not Available 774 Open in IMG/M Ga0232079_122484 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 539 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0232079_108267 Ga0232079_1082671 F039694 LADTGRQREIRGGRQADMESNIVDTMRRYFQNDTGKTKGDLEYTILNSVKRYFEGKPPEKLR Ga0232079_114175 Ga0232079_1141751 F041848 AKQYSTALAAKGALLVSIVSVAHSFVHLRIGAVGAKNLEVERLNLGEFVQFEGADGALYEVRLLAVEGFDTATMMVTRIR Ga0232079_122484 Ga0232079_1224841 F028541 QILWYLAGQDKAARGKAQRAEPTGTGKPARGKTEEKPRVSLPVGKLGGVVSFTALLFLFYGLVSIVTAVMKILQGQMEGDEIKQLIMGGLFLLFGVVIYVRARRAQRKTAEET
