Basic Information | |
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IMG/M Taxon OID | 3300028097 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133460 | Gp0293454 | Ga0255261 |
Sample Name | Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8d (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 125995472 |
Sequencing Scaffolds | 40 |
Novel Protein Genes | 51 |
Associated Families | 40 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 31 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 2 |
All Organisms → cellular organisms → Eukaryota → Cryptophyceae | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Limnocylindria → Candidatus Aquidulcis → unclassified Candidatus Aquidulcis → Candidatus Aquidulcis sp. | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater river biome → river → river water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | USA: New York | |||||||
Coordinates | Lat. (o) | 45.0061 | Long. (o) | -74.7949 | Alt. (m) | N/A | Depth (m) | 5 |
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