Sample 3300028040

Basic Information
IMG/M Taxon OID	3300028040 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133410 \| Gp0290874 \| Ga0247704
Sample Name	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-W_N
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-W_N

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	144300550
Sequencing Scaffolds	44
Novel Protein Genes	44
Associated Families	36

Dataset Contents

Total Genome Size

144300550

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum

All Organisms → cellular organisms → Bacteria → Terrabacteria group

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → hill → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → hill → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Arizona
Coordinates	Lat. (^o)	32.5789	Long. (^o)	-110.8512	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Arizona

Coordinates

Lat. (^o)

32.5789

Long. (^o)

-110.8512

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000776	Metagenome / Metatranscriptome	895	Y
F001230	Metagenome / Metatranscriptome	741	Y
F001248	Metagenome / Metatranscriptome	737	Y
F002023	Metagenome / Metatranscriptome	603	Y
F002605	Metagenome / Metatranscriptome	544	Y
F003517	Metagenome / Metatranscriptome	482	Y
F014187	Metagenome	265	Y
F018361	Metagenome / Metatranscriptome	235	Y
F021891	Metagenome	217	Y
F025522	Metagenome / Metatranscriptome	201	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247704_1000595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9999	Open in IMG/M
Ga0247704_1000779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8470	Open in IMG/M
Ga0247704_1002081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4517	Open in IMG/M
Ga0247704_1002659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3844	Open in IMG/M
Ga0247704_1003101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3492	Open in IMG/M
Ga0247704_1003861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	3013	Open in IMG/M
Ga0247704_1004093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2885	Open in IMG/M
Ga0247704_1006111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2196	Open in IMG/M
Ga0247704_1006255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2157	Open in IMG/M
Ga0247704_1006524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2101	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0247704_1000595

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

9999

Open in IMG/M

Ga0247704_1000779

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

8470

Open in IMG/M

Ga0247704_1002081

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

4517

Open in IMG/M

Ga0247704_1002659

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales

3844

Open in IMG/M

Ga0247704_1003101

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

3492

Open in IMG/M

Ga0247704_1003861

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales

3013

Open in IMG/M

Ga0247704_1004093

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

2885

Open in IMG/M

Ga0247704_1006111

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia

2196

Open in IMG/M

Ga0247704_1006255

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

2157

Open in IMG/M

Ga0247704_1006524

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

2101

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247704_1000595	Ga0247704_100059513	F104558	VHALSTWADEDEFCAADPRRRTSSEVDYGATWRIAGSNDAWRLSWLRDTGELYLCRADGYDGSCTDVRVLALLEREPDVDALLDGWRDLRFDPDGLSWLAQRVSPLVAA
Ga0247704_1000779	Ga0247704_10007796	F001230	VTAEEAVRNAHAWFEVNSGWAPPDADTLADWVADGVCRCPDECLVAPEAWCEHGLASWVLILRALETGQGA
Ga0247704_1002081	Ga0247704_10020815	F067309	MSAHIIGRPDDDLLDILLGHGADPEQAFIGGREPGREEGDGSDARLRGDEPPVPEP
Ga0247704_1002659	Ga0247704_10026593	F014187	MRIERARENVFTVTATSQELSALVAAARMAFEAMRSAPEPPPAAVLDALERVLSDFDRARGRLDEQSRDGG
Ga0247704_1003101	Ga0247704_10031014	F090729	VGRPPAGRSGADDFLARAQAWVERTCMDQNVPVKLSNPHALDKVAELLAQGRQTGRRRDSSKRL
Ga0247704_1003861	Ga0247704_10038612	F042189	VADVYEVLLVDGDTRWHAGWVVDDDTETDVLLREHDKVLLFGSRAALEHHVQQHGRELQPDLPDEIDLDLGGWLSHGMPLPSTAEVAELWHLLYDDPVAGHALGGEELGEAYDDLVEDVPDWFAQHGPLARAALADAVGRLRGSTTRA
Ga0247704_1004093	Ga0247704_10040933	F027713	MARFELSERWCSWKGVDVIFTAARAAVEAGPLDPPICEVVFDEEYDPFTVYTLEEAHEHLRRDRIRSMEIILSHIEEDDARLTLYLSGDRLQLNGYGSDWTRARAAYDAAQAVLAGHFGITTFKLPQPPRDTVAETRKRLVIEELEAALENVDSSLEDR
Ga0247704_1006111	Ga0247704_10061113	F030320	MAGFALSERWNGWTNLDVMVQAARAAAEAGPLDPLVCDVTLEWDMDEDTTLHSVDELQALLRSGAEPMTLEIVVAHVVEEEASLVIDFNGRWLQIRGAGTDWTRARQAYDAAQVEFALEYGITTFRLPTPPSDTVTEVRRRHGVRNQDPGRAEEDVFRPEPEPGPGSQA
Ga0247704_1006255	Ga0247704_10062552	F063248	VLRKARPVLVSRRLWRQPVPRRPLSSRAVSKNAKDPIKELLAGIQPALFLGNPTGTVAIMQDKVVDAGGDPDEVLAWVREHGGFPDKSFAVRTRQGFDMRPKAASKQYYVVPDDELK
Ga0247704_1006524	Ga0247704_10065245	F032127	MTMTLDEALLALNDRLGHEVTAWVEVAHETPLLIASGLLENWSQETTGLPVEAAPAHFDLRGHYSIADARFDLSEAPVESVSQRKDGLTFRIEGGARLVVTWTPVVDPGVQ
Ga0247704_1007159	Ga0247704_10071594	F090177	VSAGVVTMDAVEVVLRTQTPDGVEVILSALVYAKILEEHPAVADLGLIDRTVRDPDERRSDPRPGRERFFRREGDLWVLAVVDFEGVPAIIVTVFSAERPAI
Ga0247704_1007174	Ga0247704_10071742	F100172	MLTLASIIVGFATFEVLALTHGAESRRGFDERPERGPRRSI
Ga0247704_1007908	Ga0247704_10079084	F056476	MNYLSPSADGGINLQATLSASSAMSTPDGAPLPHHPITCTSTLAFEEDGRFGCEHVEVAPGDIRTQYCIDHSIALLLIELSRSL
Ga0247704_1008089	Ga0247704_10080893	F003517	MAGWGDDPTLKELIEAISDGWKPVRIAEDRETPGGPFDVVTVEKDGEQREYKSDHLHFHRYVEGLMDDYGLSYS
Ga0247704_1009731	Ga0247704_10097312	F002023	MMQSVILVVATALATWFIMRWLRWRPAPAEPLTGEEKEIGRARDIGTQLDGARDRASLVETERNRVALAKAVKAALWVTDARLNLAVPELLQLAQRWAGKSKVRGKKWTPPEGVTQIESVDDPNSPSAAWVSKYHHWRLESECRPSILPEEIEEDMRTCKVFVDRELVLDMTISSKDSKVVWIDALTVGPWVSELLEFAGEQKVDAQARSSDRSAQRHQDRADKIHW
Ga0247704_1010364	Ga0247704_10103642	F002605	VNPTLRHALAVLRQGRRPAVRVYESIGSDFFLAPAPGWLNLGLWEGPGEEAEAERAPRRLVERLAADLPTEGTILDVANGLGAQDLVIAEVARPRRLVALNLTEMQLRAGAG
Ga0247704_1011422	Ga0247704_10114222	F050290	MRPPWESEDAAFSLLLRVLAVAVVVVLLSVVLKAVL
Ga0247704_1014867	Ga0247704_10148672	F102223	MAGIDDPDKIDVIAEDVDGSALLSIVQTGAWSADGSERGRLKRKLATYLRYALEGQMVSSHPTLQGRPVVIALMYDHTPPQAVLDYWRRRGQGLARDGVTLVARSLDETVWRA
Ga0247704_1015179	Ga0247704_10151791	F000776	MSEIDPLGTRKDGLDAFLEQRLEEGYEIETRTDTHAIVFRRPKGLKRFTSGADPGRHVVEVDEDGIATMRPAEPRRA
Ga0247704_1015985	Ga0247704_10159851	F100747	MASTASVGVARAAFGPGEAFGFVWTEWGAAESTETVSITAKKGKSLVTQRYIIQPGWDGLWPTHQGPQSIMIVEGGGLQAYEGCGSEMKAWETGKAYYRDGSTSRHGLRVTNASSQVTQVIATYIDVDPNDHFNTLPWGSEENVRAACTQPNMKGFKHHEYGRGPAATDIPWDHEAGTMTISMQWDVAPRWQFVWHTHPPTFITHLRGTGFREYIGCDVTLTWEPNVNYLHSPGAYSRPQERARNIDYDDNAEFMTMFTKAPKERTRGQIPVEFTGPPEGCETDGTVTRTD
Ga0247704_1017043	Ga0247704_10170432	F077752	MPYSSIDPRQLFVSLTGALFTSLLLVSAATSLPIA
Ga0247704_1019241	Ga0247704_10192412	F048859	LSPVAEEPVPFSELLAGYGTTTIGDDMNIESVFALLKVRAEDGSAAWSVRSGGAPLSLEELLGVVDGLTTSIRERLTRAWKRQESPAATTGAQTRPVPIPFSELLAGLQTVGVGDGYLIESVSAVIKARRGDGVPVWHVRSSEMKLSSEELLGALEGYAATVRQDLSSSWKW
Ga0247704_1019472	Ga0247704_10194721	F030702	MTPDETRIDRRRVLQGFVIAGPALAFAAQLGWDHQAGAFPTRTEEIPDVQDFTDILILTETPTQYDLLIEIKPDNRVY
Ga0247704_1021710	Ga0247704_10217103	F001248	MSLRGNPVSLPATLPDGRTVTVRVGVPDDPYIAKRELDTVTVELAEGDEHLAAVNTPLDADQVSEARALAQELVRRLSSGELEPTAGAIEPLATTVPSV
Ga0247704_1022018	Ga0247704_10220182	F076730	MPESVRSIGATASLNPDGTGDEDFVLVDLRLYALVEGGDQVDDPQPVSLSVRCERSKLAALELSVLMSMRLSRPPTGVRLQAWERVCEQLRARGIETDPATLHALRFSLTPDGELRAAQQAVWPA
Ga0247704_1028195	Ga0247704_10281952	F051753	MDGGEQLELTLGPLYLVVVEDRVSGPLTGRPARTYRSPAQPLDDARLLAALLLDRGGELEGDGPWRRPLAGGQRHVAIVPAPAPAGPLAG
Ga0247704_1029842	Ga0247704_10298422	F042587	LEPKRKESVYTRSLARAIEIAGGVEPLADFLGCSAGDVRRWTSGESHAPMPIFLAMVDILAANALTPVALENLPAARARLSRGRPAGGRPA
Ga0247704_1030109	Ga0247704_10301091	F102223	LALHGRTVHRAAMPYARTMPGIEDPDKIDVIAEDADGNALLSIVQTGPWPTDGSERNRLKRKLGTYLRYARDGQMVATYPTLEGRPVVVELTYEVAPPQSVLDYWRRRGETAARDGVTLSLRALDDIVWRA
Ga0247704_1030694	Ga0247704_10306942	F025631	MAALSSWWMVGWVGGAVVVALVAVLLLTITALARKTDGVAKDLVTDLDSIAQKTRPLQDVGATNYAVQTITRCLRAARGGAPVQDRYSTSPGWRE
Ga0247704_1031461	Ga0247704_10314612	F100172	MLLLLSAIAFALFELLAFRYGAESRPFFDERLERGPARAI
Ga0247704_1035834	Ga0247704_10358342	F064571	MERLKRDHARQLIAGGLVVGALVVLTIGYANIRDEIHVAAQMPYVLTGGIGALILTGLGMVILRSQDDKAVLDRMGLLEATNDELRERVEYLTQLLETALLPDDVTTAAQPQMVSSRRTQ
Ga0247704_1037944	Ga0247704_10379442	F098387	MPREREHYDLPKRPPLPFRQAAVMFGAVVLALGLWFVLPNSPIVVALIAVIVLTGVFLGVGAVLRSKELDEKPGRNPVTPPSIDT
Ga0247704_1040690	Ga0247704_10406901	F032127	MTLDEALLALNDRLGREMTAWVEVSAGTPLLIATGPLENWSRETTTGLLPDEKPQLYDLRGHYSLADARFDLSDAPVESVDAHAGGSGLIFRLTGGTRLVVTWEAAP
Ga0247704_1045288	Ga0247704_10452882	F050290	VRKPWESEQAAFSFLLRVLAVAVAIVVLSLVIKALF
Ga0247704_1047559	Ga0247704_10475591	F032127	MAMSLDEALLTLNDRLGQEVTAWVEVTHETPLLIATGLLENWSQETTSVAVAEPAQHFDLRGHYSIADARFDLSEAPVELVSERKDGLTFRLE
Ga0247704_1048890	Ga0247704_10488902	F037001	VLGAVRDAQHEYDRQAVSAHQISAACPAPWHGRPDLVTHALVLLERDGLVLVAAGSTRAWKITAAGRLMLAPRRGPARERPVIGGGPHPR
Ga0247704_1049328	Ga0247704_10493282	F039575	MSDDEIRRLLSELPTAPFIWSPPGTVVIMEEKVVEAGADPAAVAAWVEAHDGDLDRTLPVVATRRGVTAIPKPKGKRYYVVPETELLRADAA
Ga0247704_1050193	Ga0247704_10501931	F030320	MDSFALSERWNGWTNLDVMVTAARAAVAAGPLDPLVCEVTLEWDMDEDTTLHSLDELQAMLGAGAQPMTLEILVAHVVAEEASLVIDFNGRWVQIRGAGSDWARARQAYDAAQVEFALEYGITTFRLPTPPTDTVTEVRRAHG
Ga0247704_1057170	Ga0247704_10571701	F076730	MAGRRRPHYGEDMPESVRSIGAGASLNPDGTGDENFVLVDLRLYALLEGGEQVDDPQPVSLSVRCERAKLAALELSVLMSMRLSRPPTGVRLEAWERVCEALRARGIETDPATLHALRFALTPDGQLRAAQQAAWPT
Ga0247704_1057488	Ga0247704_10574882	F029841	MTPSVRAKLFVTQMRRGRLHARSCRHVRVDGPYRPSGRNASPSGITPPTIMSPARCRFGSRTEIRPSARAHTT
Ga0247704_1057701	Ga0247704_10577011	F018361	RVAPDGDIRVNFGMFAGRDATAAEIDDLARAILADQQAVTIVAEQRYIVDREMEASVHQIRIEVGDGDAGALLAHAERWAQACVDDRHAEITET
Ga0247704_1059226	Ga0247704_10592261	F025522	MTATPTEYEVTCPHCKKSFTGEPIGSDERRGFKCPHCRLFVPLTRV
Ga0247704_1064256	Ga0247704_10642562	F021891	MSARPRARPGLALLLAVLSVPGSTVAWDLPLGGLWIGLPLGVAAIVLARRARGKPLDRSGSVMAIAALALAILAIGQMVVY
Ga0247704_1068175	Ga0247704_10681751	F100172	MITFASILVGFAAFEVLALTHGAESRPGFDERPERAPRRNI

Showing 1 to 44 of 44 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028040: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-W_N

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences