3300028005: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-W_N

Overview

Basic Information

• IMG/M Taxon OID: 3300028005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133410 | Gp0290878 | Ga0247708
• Sample Name: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-W_N
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79007464
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → hill → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Arizona
• Coordinates
  • Lat. (^o): 32.5789
  • Long. (^o): -110.8512
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003586	Metagenome / Metatranscriptome	478	Y
F007498	Metagenome / Metatranscriptome	350	Y
F015966	Metagenome / Metatranscriptome	250	Y
F019847	Metagenome / Metatranscriptome	227	Y
F020786	Metagenome / Metatranscriptome	222	Y
F026704	Metagenome / Metatranscriptome	197	Y
F029834	Metagenome	187	Y
F032127	Metagenome	180	Y
F047807	Metagenome	149	Y
F048859	Metagenome / Metatranscriptome	147	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247708_1001169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3922
Ga0247708_1001377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3496
Ga0247708_1001638	All Organisms → cellular organisms → Bacteria	3101
Ga0247708_1002000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2689
Ga0247708_1002351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2430
Ga0247708_1002466	All Organisms → cellular organisms → Bacteria	2357
Ga0247708_1002630	All Organisms → cellular organisms → Bacteria	2252
Ga0247708_1002701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	2222
Ga0247708_1004342	Not Available	1654
Ga0247708_1004447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247708_1001169	Ga0247708_10011691	F049823	VLRLLHLDLLEQGHSAHTLGEWLWGMHWFPHLNHREEVLALAQSLPAQWRDGMLCDPQILLQFPHVGPEPRIAFHIDEEPPWADGRRYVRIVGVALTPWRRENGGLLVKDGDEAVAVELDPTDAVMLAPDLEHSGGVNRTGSLRYGVYFRWLQD
Ga0247708_1001377	Ga0247708_10013773	F051753	MDASDADGEQLELTLGPLYLVIAEDRVNGPLTGRPARAYRSPPQSLEDARCLAALLLDRGGDLEGDGPWRRPLAGGQRHVSIVLAPSSRLG
Ga0247708_1001638	Ga0247708_10016386	F003586	MAKRKQTRAEREQREAQRAEMLANAERTRKLAERAQAKLDAATPQR
Ga0247708_1002000	Ga0247708_10020002	F076730	MSDGIRNVGATASFNRDASGDPAFAAVDLRLFALTGGGEQVDDPQPASLTVRCERTKLAALELSVQMSLRLRQAPSGARLEAWQRICDELGARGIHTDPATLHASSFRFVPDDDVRAAQQAVWPRGH
Ga0247708_1002351	Ga0247708_10023512	F029834	MNTPRSRLRITAYHIVEASPVPWTRSHGRGGMPLGGAMPASTSWCCVATVP
Ga0247708_1002466	Ga0247708_10024665	F049823	MGPAPERARLEVSRGIVPQARIDDALRLLHLDLLEFGHSAETLSTWLWAMHWFPHLNYRDEIVALAEALPAEWRGGQLCDPQILLQFPHVGPEPEISFHVDDEPPWAEGRRYARIVGVPLSPWRRENGGLLVKSDGAPVPVELDPGDAVMLAPDLEHSGGVNQTGSPRYGVYFRWLEER
Ga0247708_1002630	Ga0247708_10026301	F065699	MTEQYIGWALVVGLALGGALVWFAIGRIPRAADELTPDERRAEAEWLSAEINSRGGVAPVELVDEILDLHADRGAGRHLRSD
Ga0247708_1002701	Ga0247708_10027013	F102223	MAPRRGEAPRDLSYAAFMPGLDAPDEIDVIAEDVDGSALLSIVQTGPWARDVARERKRLKRKLGLYLRYALEGQMVATYPSLEGRPVVIALMYDEQPPQALLDYWRRRGETAARDGVTLKTQALGETVWRA
Ga0247708_1004342	Ga0247708_10043423	F070233	MHGLVSIELMHRRWGGPLVAHLQGDPEENFTRAIGSLLDALDGR
Ga0247708_1004447	Ga0247708_10044472	F100172	MITFTAILAGFTLFEVLAFRHGAETRPGFDERPERAPHRHTV
Ga0247708_1004459	Ga0247708_10044593	F020786	MVTLALRPIGHLAAWLVWHSTRISLLDDLDSPRPPDAG
Ga0247708_1006846	Ga0247708_10068462	F100172	MPIMSTMIIFTTVIAGFALFEVLALRHGAESRPGFDERPERAPQRII
Ga0247708_1007358	Ga0247708_10073581	F032127	MTMTLDEALLALNDRLGHEVTAWVEVAHETPLLIASGLLENWSQETTGLPVEAAPAHFDLRGHYSIAEARFDLSEAPVESVSQRKDGLTFRIEGGARLVVTWTPVVDPGV
Ga0247708_1007907	Ga0247708_10079072	F047807	VVQLRLDLAECPAPAVALWELLEEAQREMAMVLLATLIARSVAQDEAAGDE
Ga0247708_1008169	Ga0247708_10081691	F015966	MEPGSNFSLAGAGSVLIGATAAVIAVGIAVGWLLGSIAWGFLVGAVLGIPFGVFAVYKRYGHAV
Ga0247708_1008531	Ga0247708_10085312	F100172	MLITASILAGLALFEVLAYSHGAETRPGFDERPERGPRRNI
Ga0247708_1013360	Ga0247708_10133602	F007498	MELLIVMVLMFVGVVYGYYTVSGSGIAERPYGKVHGGAPGAFGPGSASGRDDRVVMRDWSRGAR
Ga0247708_1016187	Ga0247708_10161872	F102223	MPGIDVPDEIDVIAEDADGSALLSIIQTGAWSKDGSERGRLKRKLGVYLRYALEGQMVAAYPSLRDKPVVIALMYEETPPQVLLDYWRRRGDTLARDGVTLTARSLGDTVWRA
Ga0247708_1018162	Ga0247708_10181622	F026704	MLKRGYDVDENAIRFSNYFHVLRELVHLSCGWLALEPSFERKYELGDHLHDDARAISKIKRRLYELRHPSDYPGAPGDELNALLDALAAADTPEAYRELVYGVVKPTLVAAIRVHLAELDPITDEPSLRLLEQVAGRQERHAQEGGQVLHCDTFG
Ga0247708_1020616	Ga0247708_10206161	F048859	VAEEPIAFSKLLAGYGTTSIGDGMQVDSVFALLKVRGEDGSPAWSVRSGGTALPPEELLGVLEGLTTSMRQRLTMAWKHQSAPPTIGGPAPPVPFSELLAGLETVGVGDEYVIESVFAVIKARRPDGVPAWFVRSSEMKLSPEERLGALEGYAATVRQGLAETWKW
Ga0247708_1031671	Ga0247708_10316711	F020786	YGGRMVSTALRPIGHLAAWLVWQSSRISLLGELDSPRPPGAD
Ga0247708_1031994	Ga0247708_10319941	F019847	MMQSVILVVATALATWFIMRWLRWRPAPAEPLTGEEKEIGRARDIGTQLDGARDRASLVETERNRVALAKAVKAALWVTDARLNLAVPELLQLAQRWAGKSKVRGKKWTPPEGVTQIESVDDPNSPSAAWVSKYHHWRLESECRPSILPEEIEEDMR
Ga0247708_1033033	Ga0247708_10330332	F067309	MTNIIGRPNGDLLDVMLGDGADPEQAIINGSERRDGSEDDRRGDEPTAPKP
Ga0247708_1033340	Ga0247708_10333401	F051444	MVALGPHTTMRGMAQMKKRIALLAAIAMMAGGVAGGVASAAIDEGPGRGNPDKNPAGKCPPGQNQDTSVGGLKKCR