NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027673

3300027673: Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 B green DNA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027673 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114511 | Gp0116007 | Ga0209278
Sample NameWastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 B green DNA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size536921534
Sequencing Scaffolds33
Novel Protein Genes35
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota1
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta2
All Organisms → Viruses1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora1
All Organisms → cellular organisms → Eukaryota → Sar1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMilwaukee, Wisconsin, USA
CoordinatesLat. (o)43.023Long. (o)-87.895Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000331Metagenome / Metatranscriptome1285Y
F001488Metagenome / Metatranscriptome686Y
F001506Metagenome / Metatranscriptome681Y
F012678Metagenome / Metatranscriptome278Y
F021307Metagenome / Metatranscriptome219Y
F021521Metagenome / Metatranscriptome218Y
F028939Metagenome / Metatranscriptome190Y
F029662Metagenome / Metatranscriptome187Y
F034767Metagenome / Metatranscriptome174Y
F035199Metagenome / Metatranscriptome172Y
F042355Metagenome / Metatranscriptome158Y
F045749Metagenome / Metatranscriptome152Y
F051119Metagenome / Metatranscriptome144N
F057918Metagenome / Metatranscriptome135Y
F058681Metagenome134Y
F061006Metagenome / Metatranscriptome132Y
F063250Metagenome / Metatranscriptome129N
F065810Metagenome / Metatranscriptome127Y
F075465Metagenome / Metatranscriptome119Y
F075867Metagenome / Metatranscriptome118N
F079646Metagenome / Metatranscriptome115Y
F085200Metagenome / Metatranscriptome111N
F087278Metagenome / Metatranscriptome110Y
F090323Metagenome108N
F093756Metagenome / Metatranscriptome106N
F096902Metagenome / Metatranscriptome104Y
F098921Metagenome / Metatranscriptome103N
F099163Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209278_1000097All Organisms → cellular organisms → Eukaryota134756Open in IMG/M
Ga0209278_1000177Not Available72661Open in IMG/M
Ga0209278_1000344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria41037Open in IMG/M
Ga0209278_1000358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria39917Open in IMG/M
Ga0209278_1000618All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria26007Open in IMG/M
Ga0209278_1007654All Organisms → cellular organisms → Bacteria5055Open in IMG/M
Ga0209278_1010714All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae4111Open in IMG/M
Ga0209278_1011316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix3972Open in IMG/M
Ga0209278_1018547All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya2903Open in IMG/M
Ga0209278_1044285Not Available1653Open in IMG/M
Ga0209278_1048317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1561Open in IMG/M
Ga0209278_1065296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium1276Open in IMG/M
Ga0209278_1083076All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1086Open in IMG/M
Ga0209278_1086797All Organisms → Viruses1055Open in IMG/M
Ga0209278_1088249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1043Open in IMG/M
Ga0209278_1093798Not Available1001Open in IMG/M
Ga0209278_1108879All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana907Open in IMG/M
Ga0209278_1125114All Organisms → cellular organisms → Bacteria825Open in IMG/M
Ga0209278_1126375All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage819Open in IMG/M
Ga0209278_1137450All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris773Open in IMG/M
Ga0209278_1156746Not Available706Open in IMG/M
Ga0209278_1157874Not Available703Open in IMG/M
Ga0209278_1180693All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae641Open in IMG/M
Ga0209278_1182608All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta636Open in IMG/M
Ga0209278_1189065Not Available621Open in IMG/M
Ga0209278_1200729All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae596Open in IMG/M
Ga0209278_1216176All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales565Open in IMG/M
Ga0209278_1222029Not Available555Open in IMG/M
Ga0209278_1228185All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora544Open in IMG/M
Ga0209278_1228224Not Available544Open in IMG/M
Ga0209278_1241491All Organisms → cellular organisms → Eukaryota → Sar523Open in IMG/M
Ga0209278_1247254Not Available514Open in IMG/M
Ga0209278_1254036Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209278_1000097Ga0209278_1000097114F034767MIFGSKIFGATYDILRGVNATVWGGVEGAEKVGKIVKTGLSGADVVIGTSHALEDFGCNDVVCGSLDVIGSVSSAVGLVIGNIPRTKHLTLITGSITVGCRSVRYYCKRYGTFWGCTVAAGQGIKEAIKFTIKD
Ga0209278_1000177Ga0209278_100017766F001506MNRILYESRCRCKEKISITPKRKLSARNEGKGLPYPHEMMSKTFQIRYDKKLSSLAKFILNSFQNKYIYYAIDDILYLLKSNPVERESLLGLLYSPVLSLHNNLCINFFDIWIQEVYLNERSKVNKFLSSQSQNLEPFTEITIKFLYKTRVPVKKSDSLW
Ga0209278_1000344Ga0209278_100034434F001506MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYLLNSNVSERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYINEIVNTNKFLNNNTQNFESVNYIIIKLLYRTKIPVKKQESLW
Ga0209278_1000358Ga0209278_100035831F001488MARLELTLNFPKHFHIKTFNVKSEPMLSPLAKSILQSVQFKHFYYVRDDIDYRLRSHPMERDFLLQALFSIAISLQNNLSINFFDMWIYEIYISKVSNPNKFLKKSSQNKELDEYITIKLAYGINTSQEKKIIF
Ga0209278_1000618Ga0209278_100061812F001506MNRILYENRCKCNEEFSITKKRKSNSRSEGKPLQYPKPSELTSKTFRIEYNEKLSLAAKFILNSFQNKYIYYAIDDILYSFRSNPIERDNLLAVLYSPILSLQNNFLVNFFDIWIRDIYIDEISKTNKFLKKDSENLYKVTYITIKLFYKTRVPIKKQESLW
Ga0209278_1007654Ga0209278_10076543F079646MWSPAVAVLATVLGVGLHVASPQTGKWFATVNQLRNGGSADLTIESRNDKQSRARLSFRNVSRDMRIAWDIVAGSCNDQGAPIAPQAAFTQAQTQMDGGGSVTATIPKLESGKRYYIRVFDPQVAPTDQNVWGCANISEKP
Ga0209278_1010714Ga0209278_10107144F021521VAGYSHRTAQPPILAVFLPWGGSAGAGRIRPADAKIRE
Ga0209278_1011316Ga0209278_10113167F034767MVLGSKLFVVTYDILRGVNNTFWGGAEGIEKATRIVKTGLSGADAVIGVSHALEDFQCNDVVCGSLDVIGSVSSTVGIVLGNIPATKHLTFITGSVTVGCRTIRYYCKKYGTFWGCTVAAGQGVKEVLKFTVKP
Ga0209278_1018547Ga0209278_10185476F001506MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYSLNSNLSERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYIHQTLKTNKFLKHNSPTFESSNYIIIKLLYRTKIPVKKQESLW
Ga0209278_1033588Ga0209278_10335885F058681VTPNVRGNLPAEARSVSLVRDDASMAADQAYAACRSGS
Ga0209278_1044285Ga0209278_10442853F099163MTLYTSAKPGTTLTLKPGAWRTVAVATIPAGAQVHSMLYANVSGRATAGASVVQLDVRALRDGGTDETALQTYTAAVRPDGSWRCRITATWFGGDPGSSMHWQIMPTLNISTATVSGTRYAKGMTN
Ga0209278_1047467Ga0209278_10474671F058681VTPNVRAKLPAEAGAVSLVRDDAPSAADQAYSACR
Ga0209278_1048317Ga0209278_10483173F065810NEITSKTFQIQYQNKLSVTSRLILNSFQNKYIYYAIDDILYSLKCSSFERDNLLAVLYSPILSLQNNFSVNFFDIWIRQVYIEEVSKPNKFLKANFETSDQITNITIQFFYKTRIPVKKQESLW
Ga0209278_1065296Ga0209278_10652962F093756VRHTPAIRLRDCQPGQAVHLRGPKGYPFVSVDGHVRLRYGERGEHYGKLWLSKEDHAAGKPWAVMACLGSEVRHA
Ga0209278_1083076Ga0209278_10830762F085200MKKDEDEKPQVAEGARFNGKQGFKKKHNNKQKGQEQTNTASEFFKGFGFSMGPHGAEMYQKTVHKVGLYASMQFKNGSDTTICLLEEKLVKPEIPVLEEEHTAHEKRVWEYRMNDVLKTEKQLEGNLRNLFMVLMSLCDSTIKNKIENTSEYPKLMKRLDTLG
Ga0209278_1086797Ga0209278_10867972F090323MSLETEINQLTKSINELNANFERFFNSQSAPTPPQQIEQTPEPEQETFLPEVAKEAPNMTRESLQAFCLEAVKRNVANRDIIKSIMLNNFEARKTGDLADNQINLCYSMIAEATKD
Ga0209278_1088249Ga0209278_10882494F012678MLNQHSLEEIADIHNLLVDIKKEYEEGIKPILMKNTPSRFRNPHTVPKLKKIQINRGLGL
Ga0209278_1093798Ga0209278_10937982F051119MTIKEAFEQFDALRVANALGLEYDTVCKWRDRDQIPAYWRVKFVNLMNHHGVSISLHDLAGWIK
Ga0209278_1108879Ga0209278_11088791F000331MLRTAELDMANTVVPSDIDAFLTDAAWAIRSTYHTVLKASPGAAIFGRDMLFDIPSLADWNKIGDHRQHLTDLNTIRENRSRRDWDYTVGGKVLLRKDGILCKSESRYECDPWTITSVHTNGTIRVQRGTKSER
Ga0209278_1125114Ga0209278_11251143F021307MNRILYENRCRCNEEISITKKKKVSTRSEGKPLQYPKSNEITSKTFQIQYQNKLSVTSRLILNSFQNKYIYYAIDDILYSLKCSSFERDNL
Ga0209278_1126375Ga0209278_11263751F045749AESEKHAGAIKTFLLKYKISDDFKASGRAPDTKSRQAMIQATISPEQCSVEDLINKHDCAVVNGRILDVTWLAKLCEPDGDMLPPTRTLGHILSDMGYSQIDGRRVYIKKTNTQHYVWFKHSPKNDSQTVKKEVILFFKGDFDEIPF
Ga0209278_1137450Ga0209278_11374501F075465AILDNEITEGNYKQNNEVPIEMLDSEKMQYSNDWRTYRERNALLTKHRGQAFSLILGQCTQLLQDRMKQDTDWNMTSTSYNPLELYRLIEKTTLAQTEDQYPFATVYDQELNFYSFRQETMSNPQWYEKFNTKVDVGSAIGVTRQHKVLLEYVAQENHTLTFAALSAEQKQAVREDAEERYISYAFLRQSGAQHGNLKVDLRNDFTTGSNRYPKTRQQTLHLLDKYSKTVVVPKTTSSEGSSFAQKGGRGGRGSRGR
Ga0209278_1156746Ga0209278_11567462F096902MSGGSLDYVCYRLDDAVDSIEKRATTPLHKAFAAHLRDISKALHDLEWVFSGDYCEGQEVESLHKVVNKEMELEAATNDARTALKQLQDVLGLDA
Ga0209278_1157874Ga0209278_11578741F075867DNEGFKTLHGRIGQLAQNPRYWSVTVRVTTENEDTTGRIVDSFTFKTAERCILSDLRERIKSEVLDKDDYAPVCVECLVTARVMTEGGV
Ga0209278_1180693Ga0209278_11806931F098921PDPALTAALKVMLADACWRCSDGDGATCDPCLSELVAAAERDAEARTVLTHLRGMFDPMTGRPAGGGW
Ga0209278_1182608Ga0209278_11826081F087278SLPIDRRTPEQKARDVEDILNWKRNPKEHDSPKTDSFKKIDQLLPEKPGQSPKERANDIDNTLTWLRNRGVDEPQFGPEEPFKKTKNLPMPDTRSPDQKAKDLDDIMNWIRNPKEHDSPKTEPFKKIDQLLPEKPGQSPEDRAKDIDNALTWVRNRGVDQPSMEPTSPFDKLNSLPIDRRTPEQKARDVEDILNWKRNPKEHDSPKTDSFKK
Ga0209278_1189065Ga0209278_11890651F061006TWLRNFGVGEPQFVPEEPFKITKDVGLPDHRSPEQKANDLDEILSWVRNPRENDRPETESFKMIDQLLPQKPQQSPEDRAHDIDKVLTWVRNFSVEEPVFEPMLPMDHLRSISIDRRSPYEKARDVEAILHWKRNPNEEEGPETEPFKKMDQLLPKKPGQSPEERANDIDNTLTWLRNFGVGEPQFVPEEPFKITKDVGLPDHRSP
Ga0209278_1200729Ga0209278_12007291F075867MKTRDAALKPSKKHYLQYDAATFEHEGFKTLNGRVSQLALEPRFWSISVNVRTENYDGTGEVKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVCT
Ga0209278_1216176Ga0209278_12161761F028939MKINSAKIRNYKLFKYNLLKLQIYSNEPVGDFSAISNYMLEQIEAYLKQGLKIIFEYHRRQFKILFIGFPVVSKLKQMKLIHFTNHNFISQKS
Ga0209278_1222029Ga0209278_12220291F063250MYEDTDYDALERNVKYIPWKGKKEEWYIWHKTFLVRAMTRGYHGILIGLESVPSDEVAKTFAGLTEMTSAQKKKFNNYKLNIRAYADLLQCCTQDIISFGIVDAAKDKELSNGNSKL
Ga0209278_1228185Ga0209278_12281851F057918MPKLSKKAIYIKEYEAVVASRVRKACIRFYLDDEDSFEDEIDECMLRELAVLKESRYIFRGLYRQWETTWERVLYDCSYLTDDEFLSHFRMDRSCVMQLNSLVEDDQEFRSVSGKKGKRSSILHVMVLLKFLGSYGNDAALAKLGLMLGISKGA
Ga0209278_1228224Ga0209278_12282241F035199DAILRQAMCACIFHNLLIDHPVPPDWLDETLQELEPDDELNHSVEQRGGDTRRNQVFAHMLEGR
Ga0209278_1241491Ga0209278_12414912F021307MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYLLN
Ga0209278_1247254Ga0209278_12472542F042355MTSDLKRINKKPNSRRKQNTQEPKLVERLIKISRVSK
Ga0209278_1254036Ga0209278_12540361F029662MYEDTDYDALERNVKYIPWKGKKEEWYTWHKTFLVRAMTRGYHGILVGLESVPSDEDAKTFAGLTEMTTAQKKKFNNYKLNIRAYADLLQCCTQDIISFGIVDAAKDKELSNGNSKLAWKRLSEKFAGRNNAEKMKLIKQLNESRMGKREDPD

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