3300027472: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027472
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091531 | Ga0207449
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18054749
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	8
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001406	Metagenome / Metatranscriptome	703	Y
F001437	Metagenome / Metatranscriptome	695	Y
F001497	Metagenome / Metatranscriptome	683	Y
F002588	Metagenome / Metatranscriptome	546	Y
F005305	Metagenome / Metatranscriptome	405	N
F005950	Metagenome / Metatranscriptome	385	Y
F010126	Metagenome / Metatranscriptome	308	Y
F011016	Metagenome / Metatranscriptome	296	Y
F013020	Metagenome / Metatranscriptome	275	N
F016471	Metagenome / Metatranscriptome	247	Y
F021150	Metagenome / Metatranscriptome	220	Y
F029190	Metagenome / Metatranscriptome	189	Y
F033177	Metagenome / Metatranscriptome	178	Y
F033996	Metagenome / Metatranscriptome	176	N
F053116	Metagenome	141	N
F070478	Metagenome / Metatranscriptome	123	N
F080180	Metagenome / Metatranscriptome	115	Y
F087961	Metagenome	110	Y
F095285	Metagenome / Metatranscriptome	105	Y
F095448	Metagenome / Metatranscriptome	105	N
F099830	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207449_100022	All Organisms → cellular organisms → Archaea	1880
Ga0207449_100070	All Organisms → cellular organisms → Archaea	1334
Ga0207449_100276	All Organisms → cellular organisms → Archaea	968
Ga0207449_100370	All Organisms → cellular organisms → Archaea	899
Ga0207449_100541	Not Available	813
Ga0207449_100978	All Organisms → cellular organisms → Archaea	695
Ga0207449_101028	All Organisms → cellular organisms → Archaea	688
Ga0207449_101083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	682
Ga0207449_101138	Not Available	674
Ga0207449_101256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655
Ga0207449_101265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	655
Ga0207449_101327	Not Available	646
Ga0207449_101341	All Organisms → cellular organisms → Bacteria → Proteobacteria	645
Ga0207449_101437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634
Ga0207449_101454	All Organisms → cellular organisms → Bacteria	632
Ga0207449_101589	All Organisms → cellular organisms → Archaea	618
Ga0207449_102242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565
Ga0207449_102428	All Organisms → cellular organisms → Bacteria	554
Ga0207449_102627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	543
Ga0207449_102662	All Organisms → cellular organisms → Archaea	541
Ga0207449_103017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207449_100022	Ga0207449_1000221	F016471	MIEADKFNAVKHATVAIGLANKDTKDVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQYKEKNKGTEGIYSAFNITTKGDQLELKTYHIIKAIRLPPVKEVKGFTGSVDLDIGIGKLDCHSDNFLHIKEPTQLKLYDEIVL
Ga0207449_100070	Ga0207449_1000702	F087961	LISNSHSLKLEETAKGVRISVHVYTNDKQTAINEAIATYLETKQICEKEKIQIAPMEKSK
Ga0207449_100276	Ga0207449_1002761	F010126	METIKGPASFSIPSMKSSIGSLMVCTCICTAALLLVIIESQTAIAIDTPLSNMSGTNSGSQLESNVTNRTSSDQIAYRNPQYGIFLLFPSNWTFSTSGLPEYTQIAGFYAPLQNLSDPIPARFTISVMSYQQNVSLKDFTNVTLSSLNQTNQIKILSSGPTTLAGRPGYQVVFSTLPNIGNPVSFEIMHSWTAVDNKIYVFQYSVESSKFDTYLPTVKQILDSLRINGKG
Ga0207449_100370	Ga0207449_1003701	F013020	MSAHNNNNDKQEQERLKLDVLNKIFGWIEDKETKAVMINKYYNNKEHRAALKAFLDDMVKALDESTAETNSKEEIKRQLSYIIREIDPLY
Ga0207449_100541	Ga0207449_1005411	F053116	VLGDIYIKMNILKRNRFDRRSDSTLIVLIAISLLYIMVTITALYPFDRLQIVAAATLQENNNNTKPVFLSTISTTIATGVGATGAILTVPGYLRARKQPKFLAAYLLKIHNKHDELCRYPKLSDKSKNEYRNFLDSLRCDIIYSLKNGDINENQYRLIEDRIAEYLNRLNYPR
Ga0207449_100978	Ga0207449_1009782	F005950	MTYAKQKVKAKIHRTSDYDDKHTGIRDFPDEKAMLHYGLSKVHKVIIKKYAKDDEFMAIARKTRGIKFDYDMELYDYIGTGVRESKR
Ga0207449_101028	Ga0207449_1010281	F005305	VEDLEKELGPIIENFQNLLKDAKAKKIDSLREDEDLKKEFNKLSKDVIEPVMKKFESYLKSKDVNSSVNVRSEIVSGKNPSIEFILHFKLTHESRYPNIKFSSFGEKISIQEDRLITKGEVRQDMMPEYYDKEQITVEFIKERLIRLIKSCFDKNWQSIYS
Ga0207449_101083	Ga0207449_1010831	F001406	MTGGEEAAPRRGRAPLRQRSRKRWAIAGGVAAGWLVLEVMTGSAISATLVLVAIAALAGASLAGLRALGITSDHPWIQRMASRPWRDGQDVLRIAMRHLPDVFVITPSGSLLAPAVVELQLNPADLDSLREQMDLDVINSSLTEVYEEQVVAYQARPAAPGSRKDSISRLRPRARSTRRARPARSSCSGPAMSG
Ga0207449_101138	Ga0207449_1011381	F080180	GWYWSTGHYGNYTVDMFVLTTSAAFNQQKTVDAYLAKGNGPSKVLVETMKGVTAHASGKNLTSPGGIHTYPEILTLQWKNGTNSATLTLTNPSIVASPPTIVNTNATIYGNPQYMRLQGTGTLNVQWGGNNETASAPAIWEVSYLH
Ga0207449_101256	Ga0207449_1012561	F021150	DVDPQDGDTSFVLTVKHSNRHGRAYKATGTATILVDAKTRVRRQGAKTLGALAPNDRVHVTAKACKADLKNGGTPDLTARKIGAHPVAAPTQPSS
Ga0207449_101265	Ga0207449_1012652	F033177	WMSGDDDLRKLLATLDPQARNDLRRVLIHDQADRDAIASQLLRYRDEHGDDWTDIIDMLTMHPEVRRLLVRVLGELEADHRTG
Ga0207449_101327	Ga0207449_1013271	F001497	YSDGALTARGYRLPDGTARAGSWVLVDLATGNVQGVVPPGEFSRRFRPVDLFADVPGLPTYLGTVTASDGTALVDLALDRNPFMLANGPRRVARPHALIVPRSHRDGWSSATAAELEACHTAMTLVAAWYRSMDGGHVVFCANDSAPNRDYLRDVEAADGILGDGGTDAAVTKNPRQEVQHAHLHAFYAERGGTENHESSALDGYPVIGAGYRA
Ga0207449_101341	Ga0207449_1013412	F095448	MVASPHTRQSDPAIPNIVCPKCGLRMQVAAIEPAGNDDRTVTFGCDCGHRYDLSERAIVALARDSSDRW
Ga0207449_101437	Ga0207449_1014371	F001437	MAGFLFRLETVDGAPAEPPTFATAVPNWSPGDEIPLGHRALRVIGKRDDDADQPPVLVVEDD
Ga0207449_101454	Ga0207449_1014542	F070478	MSTNARKKNENHVRIYDPDDLEWNAEHQVCPFKGTTLSAAQQVVVKLCKRIKQLGGELPMNWLDCELIYLERFAQKLQRVLDRKVLGF
Ga0207449_101589	Ga0207449_1015891	F033996	MQFNFTAKDKHALKSLSGDLRDMFSMKRVEDRLENPEYRKVFDASFFRTVEGNYVDEMLNWVEDFRKRLDNQESKESKEQLYSETKELVDAGWIQNPNG
Ga0207449_102242	Ga0207449_1022421	F095285	MSVKAGQAQHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGR
Ga0207449_102428	Ga0207449_1024281	F002588	SLIVGATLAVLIWFFPRWFHDHISDEMNAFVLGLVPLLAGASVFLVRWFVSPYPIYMQVRRKVDSLTDTKKEERAKAVQACFERSAAILKQHHSLLLSFHALSRAEGHRLESNKEIADVCDLIQEAGYDHPFEGISPGYVPEKDWLPFLKYVKHAPNINPEEGKDYIDAANRWRDDHGYPLPPG
Ga0207449_102627	Ga0207449_1026272	F011016	RVLVVLDGDTIVVTMPGTSYSVTYRKLHDSPLLVASDMRDDPDSPINKFAFRARAWIAANDKARELGWIV
Ga0207449_102662	Ga0207449_1026621	F099830	NADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVKVETPNTK
Ga0207449_103017	Ga0207449_1030172	F029190	VQLVSHLADADFRRYVTGTVDPETERHVRVCVCCALRLADAAMQAYWWERRGPLGRLVRLNNTQAVDELLTEIAREQRRDAA