3300027454: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027454
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072121 | Ga0207623
• Sample Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11212887
• Sequencing Scaffolds: 33
• Novel Protein Genes: 37
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. JS614	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000959	Metagenome / Metatranscriptome	821	Y
F001033	Metagenome / Metatranscriptome	799	Y
F004468	Metagenome / Metatranscriptome	437	Y
F005393	Metagenome / Metatranscriptome	402	Y
F007864	Metagenome / Metatranscriptome	343	Y
F009014	Metagenome / Metatranscriptome	324	Y
F009969	Metagenome / Metatranscriptome	310	Y
F010291	Metagenome / Metatranscriptome	306	Y
F011423	Metagenome / Metatranscriptome	291	Y
F012309	Metagenome / Metatranscriptome	282	Y
F015492	Metagenome / Metatranscriptome	254	Y
F021337	Metagenome / Metatranscriptome	219	Y
F021725	Metagenome / Metatranscriptome	217	N
F024827	Metagenome / Metatranscriptome	204	Y
F025063	Metagenome / Metatranscriptome	203	N
F029907	Metagenome / Metatranscriptome	187	Y
F030468	Metagenome / Metatranscriptome	185	Y
F031916	Metagenome	181	N
F046352	Metagenome / Metatranscriptome	151	Y
F048404	Metagenome / Metatranscriptome	148	Y
F049750	Metagenome / Metatranscriptome	146	Y
F050356	Metagenome / Metatranscriptome	145	Y
F051773	Metagenome	143	N
F053863	Metagenome / Metatranscriptome	140	Y
F054834	Metagenome / Metatranscriptome	139	N
F055824	Metagenome / Metatranscriptome	138	Y
F057350	Metagenome / Metatranscriptome	136	Y
F070676	Metagenome / Metatranscriptome	123	Y
F073508	Metagenome / Metatranscriptome	120	Y
F081534	Metagenome / Metatranscriptome	114	N
F087541	Metagenome / Metatranscriptome	110	Y
F093441	Metagenome / Metatranscriptome	106	Y
F093817	Metagenome / Metatranscriptome	106	N
F096831	Metagenome / Metatranscriptome	104	Y
F098257	Metagenome / Metatranscriptome	104	N
F099252	Metagenome / Metatranscriptome	103	N
F104058	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207623_100039	All Organisms → cellular organisms → Bacteria	4548
Ga0207623_100132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. JS614	3227
Ga0207623_100238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2546
Ga0207623_100392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1987
Ga0207623_100435	All Organisms → cellular organisms → Bacteria	1881
Ga0207623_100535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1672
Ga0207623_100548	All Organisms → cellular organisms → Bacteria	1644
Ga0207623_100631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1511
Ga0207623_100687	All Organisms → cellular organisms → Bacteria	1419
Ga0207623_100803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1265
Ga0207623_100833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1231
Ga0207623_100855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1202
Ga0207623_101064	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1044
Ga0207623_101302	Not Available	915
Ga0207623_101340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	896
Ga0207623_101378	Not Available	885
Ga0207623_101470	Not Available	846
Ga0207623_101716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	769
Ga0207623_101724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767
Ga0207623_101740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762
Ga0207623_101790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749
Ga0207623_101795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	747
Ga0207623_101997	Not Available	699
Ga0207623_102329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636
Ga0207623_102394	All Organisms → cellular organisms → Bacteria	627
Ga0207623_102458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618
Ga0207623_102759	Not Available	583
Ga0207623_102761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583
Ga0207623_102814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577
Ga0207623_103112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	550
Ga0207623_103234	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	540
Ga0207623_103506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519
Ga0207623_103635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207623_100039	Ga0207623_1000391	F099252	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGM
Ga0207623_100132	Ga0207623_1001321	F081534	MRRAFALFGLSATLAVAWISMLPSQALATVTGPCTVSIDGADVTNGHGVPGSAVPLQSGSQVSVDGTAQSRVTDLNYTVHIAGGGVQVGTVTIAQDGLSWSGTVDLESISNATVGLFEVTAEVQTTGQDCSGVAYV
Ga0207623_100132	Ga0207623_1001325	F012309	MAPNAGYVIAGYLITALALGGYTLRLFARARAAKRRAETIAGRRRDG
Ga0207623_100206	Ga0207623_1002062	F093817	MSSFRELPLSARLVVFGYVALGAFGVLLRVPEMRTWSWEDVAATLGLALAAALSEQFTVAMRHRTEVENFSVTDAVWVPALILVSPSVLTLSVLLGSLAGHAYRRWAWYKVAFNAGQFVVAITVAEFVYRLFDLPPSFSFMTCVACAVAMSCYFAINEISVALIISRVEGIPLREVVVLPGGLNLLHAAGNLTIGMLAALVWHAGPMGLPLLIAPVVLSFFAYRGWLQNKREEEQRREGDRMRTLYEAGRA
Ga0207623_100238	Ga0207623_1002381	F009969	MDGILVQATRSIRALIGVATEGAPADEIDLAYHALLDQCAAAEREALRTPPDPVARFDARAAAVLSVAYRPVLDVLCSGRSLRSEDVELAQKSSGWLNLAYEALLDGDHDTVERCLEMASAFVAADEDTRDAAPPA
Ga0207623_100392	Ga0207623_1003921	F096831	MPHVPTTYAAGQIAAEAGCDADRVRWLAAIGLLTSDEHERFTYGSVLAVKMVSALMESGVAAETIEFAASEGLLSFRRLDEYLPYEPGPRSERTFAEFLADAGPRAELLPAVYEVLGLPTPDPSTTIHVDEETMFERYLDAWRQAPDEDSLLRAARLMAQGTRMALLGWMELLDEQLARPARERLLRGELERFPDDVRVTFTHAISLAPEMFTWLAARYLEHRSVDGIVEGFERFLASRGLARLPAPLGPPAIVFVD
Ga0207623_100392	Ga0207623_1003922	F093441	MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEADLCDSLERVRDLAPNALLIVIGDHTPAGALGRIEPGVSGTVMAGLLHALVAEGVGGAVGWGLVPALGPRGMLQVPQRISGWLLSAKADLVREYVANAFRDHAELLTAASTVAVTVSASLVLTLSAAQTHERPHERSERVHAPAPAVQRAPLYPAVAVSPTMPTPAYVPSQNEGELGDRRGRGESPDHGRPVGQDVGDMGQIENAGDDLGQVETAANDLGQGENAGDDQGKNENAGDDHAHGDN
Ga0207623_100435	Ga0207623_1004352	F024827	MDTATRTRSHRITVVLCLVLASGILGSQRPSPAREPLVIHGANAAEERAIDWSIRRYREAGLEGMPDLEVYVHQSNRGCGDGIGYYLAGRIDLCTTASSEPYQRKFALHEMAHGWIETNVDGGVLDRFMRVRGIATWNDRSFDWKQRGTEQAAEIVTWGLGEGEIAPLLPEALGAPALARLYELLTGRDPITPATR
Ga0207623_100535	Ga0207623_1005353	F054834	TFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0207623_100548	Ga0207623_1005481	F050356	LGRRNTEVGIVASLLVTALLGSACASDQPTISAPSRTTGPAHVLQPIPPTALPGNSADPTDLDASSIASDAVDIAALEALLDQAGFVGGTQRQFSRVHGGRRRILARVLSFETREGAAAYIGWLRDHADEVIGDAAPNTGLDAPRGGIVFVHQPNPCCHNETRMFLAMWHQGSTVVTIEIAGEGARETDVP
Ga0207623_100631	Ga0207623_1006313	F007864	AVALLPRREPGERPPIEMRKPPQPSKWRPLILLGVFLVGLTAVAAFFALRPDPCGDTNFESENFGYCLMVPEGWEAGPAQFGADVTLDQFAPPTGSATVVVEAVDLETGVALDQWSEFVRKRDEDAGLTPGPASDAKLGGADALQWDVSVASEGGNSFLMREVVVVSNDVGWRVTLNDLQEGFDTSAVAFRDMLDSWQFA
Ga0207623_100687	Ga0207623_1006873	F010291	VSPRRRRLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWRSPDLEPEWDACSRGLDQSLALADRVRTVGAHPEGFEGLIGLIGDLLAPLDPFERAATRFRELG
Ga0207623_100803	Ga0207623_1008032	F057350	MGIVLILLGLTAAGLVVDFALENWSAAANEVSFSLFGGSFTATQVEVAIGAAVLGALAIALCVLGAGLLSGSHGRRRSTRRRMSELERENAALRDRRPDEDDRVVSVDD
Ga0207623_100833	Ga0207623_1008332	F104058	ADLAKDASVSAAEALRQNGDEEQAKLAALDTIADADERVRLKRIDVGRREVTVVLVVHADTLVVGRIPFLDDLGRVTVSGSTAVPRD
Ga0207623_100855	Ga0207623_1008552	F055824	MAPTILAALDAPASIEHTGRVLHEVVGADAKVSQAEPSKPAVQIPGMPSDDDASAVSDTEADEMEEHLRGLGYIE
Ga0207623_101064	Ga0207623_1010642	F048404	MHRRLGTRLPLGGLLGAIAGAMVGTLVGFLFFDRSAAVLTSILASAVFGLGVGMLVAGYSSLESPDPGAEPSDTARPVADRPEVMREERPDPPVPNQMPED
Ga0207623_101302	Ga0207623_1013021	F025063	SGAIAYAVDDGAGGSTLWMVDLLVGMGRPGPSIPTGTSELVDLSAAAPGWIGVERRVRDRTVAAVVQGTSADADIDRLGSGDLIAWGPGGRSLVFARNGRIERAGCAPVRIRLVTVLTEKVEWALDDPGFCGPILSLSRSQAATYFSAASGDRLSVYLTGTVGIPHLTFEGVGMLSASAPAAFLLRPDASPRTSSGASREAGTMLGWKGVGGPVTVGDGEHDLAVDRILAWSADGARVALVGTMGARSGVFVLFAGSGSGPRVPRYVMPAGRTIDGTFDADGRLYVATDGAIYVTRDGEPTRVA
Ga0207623_101340	Ga0207623_1013402	F073508	MFIGEVEETGVIEPLVFPRALPADEPVTPQTEPDEPVLEPAAAR
Ga0207623_101340	Ga0207623_1013403	F021725	MLRAPDGIVPLVGYREWSIRTESDGLSPRLLSLFHPTTWPHDRPFSAVCLRPITWPERVTPRVHEGVPDESCQCGIYAFRRPEFESLNGAAGPKVRGIVFGWGRYVLGTLGWRTQFARLVALLEPGDDPGDDPGPVGE
Ga0207623_101378	Ga0207623_1013781	F070676	MASKTKESKKSKDPENSSVVTTLGESALTGLPGKIGGAVAKPVSKHTRWSEQQIRTVIGLALLAWALYRVLRPTVRAVRSR
Ga0207623_101470	Ga0207623_1014701	F021337	SRLVGVRWIAADDEHAPRGIHPALNVVVHVLAAHDSSPVEIGIEEAGRKYRPHPTTSGDMNERSRTTECFMLGGGIADTGSMWGGAGILIVAIGRAINIIRDRPHDAEPSADAAMADLAWDQDLRQQAAMRRSEKLRAIGSQATFFSGLARINGDFRSVHVAVTPRDFVLLDNWTHLDPETELASLPRESIMQAVIVDANGYEVADQLLDPIRELETPQEERYAVVLKRHDRSGELPPVSFLFRSGEPALECRDHYRRFIEQRAS
Ga0207623_101716	Ga0207623_1017161	F098257	VIPVPRLLRVLATLCVVVLFAACSNDPSSAATVGETGEISIDQLHGDVALYGFLAKLSNVPCGTPVGNETQESACARFTLANDIHEEVAKAYASENDVKADPAAVTDAL
Ga0207623_101724	Ga0207623_1017242	F031916	MPRPMKPTGRLVAVLCLAIALGACTGDDAGGNGSTASTGPSTTSQVPTPAQTFTGAPGTATYEYANEGLLVTLDLNGSNGTLAVENDSDHDLDPPGLYVEDAVDGHEIDVQVVDSAPVAAGEQASFDVK
Ga0207623_101740	Ga0207623_1017401	F009014	MAYDPVARWSARAWALVAYLAVLALVAGIVLFAVRYQPLTAANFASGPVTSSGANVVRVGYANGGTFSFGFLLVNDGPLPVKIQSIRVTGQNDLLVTVGLETAAQRYAGSLAQGDPSLDKFLPFTLAGDDRRWIAVRTRFGNCGRFVAGDSQTYTRFNVTYSVLGFTKHAWVALPKDI
Ga0207623_101790	Ga0207623_1017901	F030468	MSTKAGTLGFSERPALFTFWTVAVSTLAASALILSAVALNVAGRDARPVTSVEGSGTHEASIGATLWDAGKLEAMKGRVLAESARIQDYAPLWDAGKLQAMRGRVLAESARIQDYAPLWDAGKLEAMKGRVLAG
Ga0207623_101795	Ga0207623_1017952	F004468	VTTRRAAAVFDFANYESTTISKETLCELPDREAQERRARDLQKPAAQAETRMIHE
Ga0207623_101997	Ga0207623_1019972	F046352	RSKRRWLGVGAVLLAVLMGVIAYAALVDRSAENDFATSATEACSAVQRPEPGLDLSRAPTRGELQHARNIRFQALGAIRALGLPGEDAVLVSRFLSAFGETNASIASLDRAIGADMRRVARAVRNLRGDVRDERELAATAGIAGCGGLAIR
Ga0207623_102329	Ga0207623_1023292	F005393	KAASYIGQHGGAVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRRPHTFKQIEQDGLVIHYAFGKLKEPEELHLDRKGWRRGTHRLEAYWNGSVFVGDDIPPPGAS
Ga0207623_102394	Ga0207623_1023942	F011423	NTHGKWRIEHGKLIETWRFSDEFSDSTSTEEIIELTEWTFKSRIISQEGPGKPEGQVLPSEVFTITRVTKQSDK
Ga0207623_102458	Ga0207623_1024581	F049750	VTDARVVPFLVSELRLPPDEQELLAREWWPSYAHAVIHRDGVFLFDNGAGFGNAEVEETFTPRVTTIEDAL
Ga0207623_102759	Ga0207623_1027591	F051773	TCASVGGFASGGKEDTMKKALAAMVVAALLAISASSALAGGSGWAVRVKGGGRAEVTWGTWRGTSTVHVALPWRHSVRVGAFDVVTVAGARESGGTGKIVCAVLHGGVVVARQVGRGPYAVCQTSATTS
Ga0207623_102761	Ga0207623_1027612	F029907	RAIEDEVFQTLLEQVRDLHRRTDELTRSKTRVHENIRARLSWNVAPSLPTEQREIADEVVEALTQPRLSTSQSRLLYRAYFGR
Ga0207623_102814	Ga0207623_1028141	F001033	MKFLLLTGAHRAAVFSLLMCGHSLIARLTIAVFVFLMLGVTSVVHAERPDSTAGTSSAGTRKLVIGPSSASVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRG
Ga0207623_103112	Ga0207623_1031122	F053863	DAVRAEDLARELAFRRELRIDPQKALSAFELRTKPAR
Ga0207623_103234	Ga0207623_1032341	F015492	LYAGLQSGARAQVFDFGQIEEFESLGSGTQMGGSPPKTIIDDGARHTVLFTILESNTEAKIYWKSKDGSQTTIMRGQGLRAFQTVGEFRIEATGDDSRSFRYGYVLFRLKSERSAQEDKI
Ga0207623_103506	Ga0207623_1035062	F000959	RINHKQRGSRRDNRARRSHQSFPLTDCNYHPTAETQVNSSVGWRATKPPAFHKLSSEFLGGETSRDYVAELLFFVLITGIAAWPIMSMLIAVVRMIRNY
Ga0207623_103635	Ga0207623_1036351	F087541	RSGFAAVSVDSEAPALRKVGLFSFSGEYLERFPVSGKDSILLSEGFLPNGIAFGPGNDEITLTSWNSVRILDLRDGKVTPVPPPTFRDQFMRLVVGPGDVATRLVATSLYGRVHVAKGANRQEPAEPVVYRGSIGIPQFSSDGQRLLILSGAMFNLFDSVRLIDVSPLY