3300027442: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027442
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072115 | Ga0207598
• Sample Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12926369
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	7
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002896	Metagenome / Metatranscriptome	522	N
F005305	Metagenome / Metatranscriptome	405	N
F019548	Metagenome / Metatranscriptome	229	N
F040398	Metagenome / Metatranscriptome	162	Y
F045731	Metagenome / Metatranscriptome	152	N
F057496	Metagenome / Metatranscriptome	136	N
F068543	Metagenome	124	Y
F068551	Metagenome	124	N
F068808	Metagenome / Metatranscriptome	124	Y
F070698	Metagenome / Metatranscriptome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207598_100210	All Organisms → cellular organisms → Archaea	2071
Ga0207598_100381	All Organisms → cellular organisms → Archaea	1448
Ga0207598_100537	All Organisms → cellular organisms → Archaea	1096
Ga0207598_100548	All Organisms → cellular organisms → Archaea	1089
Ga0207598_100734	All Organisms → cellular organisms → Archaea	874
Ga0207598_100767	Not Available	851
Ga0207598_100813	Not Available	818
Ga0207598_100864	All Organisms → cellular organisms → Archaea	777
Ga0207598_100962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	720
Ga0207598_101180	All Organisms → cellular organisms → Archaea	629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207598_100210	Ga0207598_1002101	F075479	RAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207598_100381	Ga0207598_1003813	F068551	MQLGVIVIFIFVILGIVFFIVFGSGYFKTENPQTKNLQNRSTVVFPNADSIPPECKYNPNDLLCQFQLEKQKMKLLQNE
Ga0207598_100537	Ga0207598_1005372	F005305	VEDLDKELGPLIENFQNLVKDAKAKKLESLREDEDFKEEFNQLSKDVIEPVMRKFESYLDSKDVNSSVNIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207598_100548	Ga0207598_1005482	F019548	GGILFILHKSFSSDSKPPEEQTSVVRDDERKSAIFEINFGTVAGLSMLFECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYEDGLKSAPVEQSELVHRVNQAIDKCHEYMLNSVELDKKVYVDASDRMSGYVKLTRIGEYIREIHPDLFIDNNTKSE
Ga0207598_100734	Ga0207598_1007341	F002896	MDKINEDAILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQELYNECVKTFKDLLIHSDAQHH
Ga0207598_100767	Ga0207598_1007671	F070698	MVILNISETWNNGHNTTFRDSYLEDDNSEILPNGNAPYVIKGNGDCMIIVHADALGASKNFGDGH
Ga0207598_100813	Ga0207598_1008131	F086321	MNPSKKETYKILERFTSQKGGILFILHKSFSSDSKPPQEQTSVVRDDERKSAIFEINIGTVAGLSMLCECEKVLADQVMSLDFLDSGIEGDVIWFGGILDKSGSEFIGS
Ga0207598_100864	Ga0207598_1008641	F057496	HNSAYCKDEHVFGDRGEPLRLSHLIAFNVIEDAEHITGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGNPTVMKNIDAYLRKNLLESEYGLKL
Ga0207598_100962	Ga0207598_1009623	F068808	YFLTGDPIVDVVIDDPARLDGNPARLIVADIDQGGEVSSSVAAAMTLGDGATGYLVVAIFPSGGWDDERADFERIVRSFRTDVPPGLETFPVDDQAS
Ga0207598_101180	Ga0207598_1011801	F068543	DNNATGTTNGTTTVACPLLEPTVVIDSALDQAGNALSPGDLISPQKVTFTFSAHASNTPEALEEEGPQDYEYECALDDESYSSCSSPMLYDMQAGKHNFEVRLVP
Ga0207598_101431	Ga0207598_1014311	F040398	SNEFEAVMPSNIKVLAKGSSAVPNFLRLCVATSGKVLSERRDDLVKFVAAEMDAYKFALANRAETIKVSQEMTHAKPDDKRAEFITDEAIKDKQIDPTLSIPLDRLDWMQNLFLKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207598_101872	Ga0207598_1018721	F045731	PVDEPAFCEQAAFLANALVLSDADAVFDLSRRVSMDCADLERDLFPQCDHEDTLDGYVVGDHQGHLFVYGPADYRRTLGFFVEAVDPDYSDELGGAQMQILGVSTCGKGADTSYHLVYLVGLGDPNSTLPADRFLGTYELTKVDGDWAIGATYVGLYTDWQLVLDDP