Sample 3300027427

Basic Information
IMG/M Taxon OID	3300027427 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072058 \| Ga0207472
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0095510 | Gp0072058 | Ga0207472

Sample Name

Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19681766
Sequencing Scaffolds	25
Novel Protein Genes	28
Associated Families	27

Dataset Contents

Total Genome Size

19681766

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → agricultural field → agricultural soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Wisconsin, United States

Coordinates

Lat. (^o)

43.3

Long. (^o)

-89.38

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F006812	Metagenome / Metatranscriptome	364	Y
F011965	Metagenome	285	Y
F013520	Metagenome / Metatranscriptome	270	Y
F017759	Metagenome	239	N
F019867	Metagenome	227	Y
F022685	Metagenome / Metatranscriptome	213	N
F024822	Metagenome / Metatranscriptome	204	N
F025757	Metagenome	200	N
F026499	Metagenome	197	N
F028554	Metagenome / Metatranscriptome	191	N
F029148	Metagenome	189	Y
F035133	Metagenome	173	Y
F037212	Metagenome / Metatranscriptome	168	Y
F049708	Metagenome / Metatranscriptome	146	Y
F049951	Metagenome / Metatranscriptome	146	Y
F050353	Metagenome / Metatranscriptome	145	N
F052694	Metagenome / Metatranscriptome	142	N
F057488	Metagenome	136	N
F058528	Metagenome / Metatranscriptome	135	N
F061986	Metagenome / Metatranscriptome	131	Y
F065246	Metagenome / Metatranscriptome	128	Y
F070441	Metagenome / Metatranscriptome	123	Y
F077414	Metagenome	117	Y
F082749	Metagenome / Metatranscriptome	113	Y
F090606	Metagenome	108	Y
F105676	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207472_100111	Not Available	2175	Open in IMG/M
Ga0207472_100129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2111	Open in IMG/M
Ga0207472_100227	All Organisms → cellular organisms → Bacteria → Proteobacteria	1823	Open in IMG/M
Ga0207472_100228	Not Available	1822	Open in IMG/M
Ga0207472_100313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1640	Open in IMG/M
Ga0207472_100453	Not Available	1470	Open in IMG/M
Ga0207472_100457	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
Ga0207472_100631	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
Ga0207472_101121	Not Available	1034	Open in IMG/M
Ga0207472_101463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	907	Open in IMG/M
Ga0207472_101912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
Ga0207472_101979	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
Ga0207472_102039	Not Available	767	Open in IMG/M
Ga0207472_102172	Not Available	737	Open in IMG/M
Ga0207472_102405	Not Available	695	Open in IMG/M
Ga0207472_102447	Not Available	689	Open in IMG/M
Ga0207472_102763	Not Available	643	Open in IMG/M
Ga0207472_103046	Not Available	614	Open in IMG/M
Ga0207472_103186	Not Available	601	Open in IMG/M
Ga0207472_103393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
Ga0207472_103468	Not Available	578	Open in IMG/M
Ga0207472_103986	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	542	Open in IMG/M
Ga0207472_104116	Not Available	533	Open in IMG/M
Ga0207472_104351	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	520	Open in IMG/M
Ga0207472_104705	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207472_100111	Ga0207472_1001112	F017759	LLFGVVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDALRLARNDPAPKAPVTRPAFPAGGIAYRTCAIDNRLIERLKKSEGPKILIVQNSCDTEFFMANLRQIPSILRG
Ga0207472_100129	Ga0207472_1001291	F025757	SLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA
Ga0207472_100227	Ga0207472_1002272	F070441	MRISTLDISGTTTTVRRHEALLRFARYLLVYNLAIISWVVISKLSQMPSFEGLLEWLTGPTWKFAALVLGSVGASYLILAHRLWWAYAVIMLAQVVYFFSAGSAELAVMRASVLFAYGVITLPPMRPLAPLATDIAVMVICFCYIMIVLCLYSAAWVASGGRVPQGAYGRRPTPLEPLRPSRLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGAPIVIAVICLVLANRLRHFGRQHFINRLAELKVLPAASTLFLRAFRDDQVRIRRASRNLFSSVFDLGRVPATLDELMLERLDGR
Ga0207472_100228	Ga0207472_1002284	F013520	MHPAETYRRRAERAERDFENARDPKAKRFAQVAAQRWRELAELAERQETEGAPIPPHFRDASEAVHYAQAQGYLLYWKGTPAFTKRQRELGGRFATLPVFTRKGMTHVSLVPLDEQVKASEKE
Ga0207472_100313	Ga0207472_1003132	F024822	VRQLFIRVAGVILCALALSGCVDSAGPLLSEAQPVLGERLRLQFYSLSKGTADEPEQATYKWDRGAYQRTGGGMTDISSFSVHPLARDIFVVQSAAAKRPGTFEYAVARRLVDGVYQVIAVDEADAGQVTRARFCKRASDSSCRIQTRNQLYAFARATAERRRGQGGLVLRLADGVAESS
Ga0207472_100453	Ga0207472_1004531	F057488	MRALLLGTLLAIGLIPGATAQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHAIAEINLVGKASSTTTTSLLQQIDA
Ga0207472_100457	Ga0207472_1004571	F006812	MLGTALLLLIILLVALPFGTAIACGALMQWAGNMISGWSSIGGLALGIYFFHKCMEVLAV
Ga0207472_100631	Ga0207472_1006312	F000268	MLMRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFHRDLTTRPKTDIQSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFASDGHGGSSGVTFGFDKNGRMTFPDSFDQ
Ga0207472_101121	Ga0207472_1011211	F049708	MRVKWMLIGFGILYLVFALSFIPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDAAEILLAVILVAVAVFSALRLRRKDLTPRWRGTHTFFLLLALTLVAMVRFTLYSWSHFA
Ga0207472_101122	Ga0207472_1011222	F082749	MDGESVDAAGKLGRKRLINHAMTLDAGLSLERLRHDIHPEVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS
Ga0207472_101463	Ga0207472_1014632	F049951	MKAFIMACVAAVVIAVVGVVALNSVPDSAEKAFSSPTGVSLST
Ga0207472_101912	Ga0207472_1019121	F058528	AFKRIGWKAKRDTSVNDVPDGLTVWPEDDVARAICNALTMATGALVAVREDQHLKDQGTYAIGVGYKLI
Ga0207472_101979	Ga0207472_1019791	F035133	MAKVFTDRTSRTAIDARIAEERRNPVESWNELTAAREDNDLSFDKVEYEIKPAKWP
Ga0207472_102039	Ga0207472_1020391	F025757	MSYSTPLFWLEMAVLICCVALSIKRRSRPAMWVALGIVAHCATWLAMHDEEILIRLIAGALVYLGLLKLSPRAARVWLCAGGALAGAFLLGITALSLLMSFPSRWSVFGLSIGATLLLLVCGLLIGFWVVYRWTEPAQFSESQPRQEA
Ga0207472_102050	Ga0207472_1020501	F029148	KYRGKPVKGRYNVSDNLVTVVAWSGTKTARLGVLPAERLAKMLLRELADQGETK
Ga0207472_102172	Ga0207472_1021722	F037212	AAKIGFADWRRAMTNNEIGAADISEPADAIAWRHFWLANVVVESDGRPLVRATRPALQPRKDSLSRRLQRLRHMRAILDAPRH
Ga0207472_102405	Ga0207472_1024051	F026499	EKFARQSAELRLRLTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIILLESEKAVLQAQLDVALEESKTLADRVHAAEAASDRREATVALSIKQIEFLNTELTAAAAERFRLVAAMQGEQRRQRSVFSQQKSILEDKLQEKEALAATQGTKIKQLEGVRDELDKRVRVIEALLASEREVAERKTRRPTEILGAAG
Ga0207472_102447	Ga0207472_1024471	F105676	IAIGNPQDRKGAARQSPWGAQRLYVDDAHWQETVTMLARDADRIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVNRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR
Ga0207472_102763	Ga0207472_1027632	F028554	MRKAKQVRNRALSAGEGRRAIIVTAALTGLFLLAAFVTAGSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDSTPSENI
Ga0207472_103046	Ga0207472_1030462	F022685	TLMKAILGLAFGIALMSALQTVGVWSLQEHIKSQSDAGLPIGNTPVITNFDADALKNGILPKYGPIDTREGQRLAIEGAARRIDLQNRAVQKYLPR
Ga0207472_103186	Ga0207472_1031862	F065246	VQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207472_103393	Ga0207472_1033931	F050353	FRTLCERPHKAPKRAVRLSILGRAAQEARMRRALNVALVVAGVLLNVLASRSTTVANSQAAQRSAQNGTIVYGLHVALPSNMKNFPPELVPLP
Ga0207472_103468	Ga0207472_1034681	F019867	SAATILAFASPLHAQGIEVFGGYSVNADYVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHEVRNGLGIKVDVSGYSDTFPPGPAAYCQPDGSTAGIACGTGLTFQATGRAFYVTAGPEWKIRRGKRFAPFAQALVGIAYTRSTFMMSGSDVQYTNPFTGGVLLFTSAGFPPDRSIHYADAHADAGLALAI
Ga0207472_103480	Ga0207472_1034801	F090606	PRPVAPEVKTPVAKVETAPIAKEDKPDAARPQADDGGKPGATPNCEKELRRTADLLRFFANRIQGGEDAQSVVADMRQQEKKISAVCD
Ga0207472_103986	Ga0207472_1039862	F061986	AALRPNVMTTMMVFWALINPLGVFLAGPILDAFGTTPVLIGFAAVQTVTMAISSLAAARELGRKREEPALAPST
Ga0207472_104116	Ga0207472_1041162	F077414	DALEIPPSRFGRLITLQDAARAAAAAWPGEIAAAV
Ga0207472_104351	Ga0207472_1043511	F011965	IGIHALYGSAAGAWLGVGFVHHSWGANGEAVLNLSTNTWSLMTNANMYSSGHSSIGTRFVNGSGSINGMYSGGACLRNPSNLMDATRYTFIMQPPSTATGWHDGEHSSWFNASTNPHAPVLFSRYNISTPPRPVPWYGEIIAAATDGSNRVWRFAHNHNGGLGGYYGSAFAQI
Ga0207472_104705	Ga0207472_1047051	F052694	MSTRFRSVLTLVVATLIVGTSTAWAGPLAKGANTHVVDDGTVSWTLPAGQCPAAPGGLTGSGERHRVTITKVNADGSTTIIINDVVRGTAWDATGTYKFVYENHSIDQAPAGGGVHQISMEDNFILNGNGSVGHLAVGFNWAWTYTDPNGPFDVLPLANLVER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027427: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences