Sample 3300027099

Basic Information
IMG/M Taxon OID	3300027099 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0057307 \| Ga0208726
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0085736 | Gp0057307 | Ga0208726

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	15419329
Sequencing Scaffolds	30
Novel Protein Genes	34
Associated Families	32

Dataset Contents

Total Genome Size

15419329

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.471116

Long. (^o)

-72.17263

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000083	Metagenome / Metatranscriptome	2471	Y
F000156	Metagenome / Metatranscriptome	1877	Y
F000514	Metagenome / Metatranscriptome	1062	Y
F000708	Metagenome / Metatranscriptome	926	Y
F003045	Metagenome / Metatranscriptome	511	Y
F003793	Metagenome / Metatranscriptome	468	Y
F006319	Metagenome / Metatranscriptome	376	Y
F006679	Metagenome / Metatranscriptome	367	Y
F007656	Metagenome / Metatranscriptome	347	Y
F007822	Metagenome / Metatranscriptome	344	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208726_100025	Not Available	2680	Open in IMG/M
Ga0208726_100030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2590	Open in IMG/M
Ga0208726_100064	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
Ga0208726_100104	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
Ga0208726_100157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1735	Open in IMG/M
Ga0208726_100183	Not Available	1658	Open in IMG/M
Ga0208726_100262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1468	Open in IMG/M
Ga0208726_100279	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
Ga0208726_100387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1264	Open in IMG/M
Ga0208726_100898	Not Available	878	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208726_100025	Ga0208726_1000252	F089285	RWSRRLRSAGDWRWRRGGCSATDTRARPAARRTTIQHTAHHPGAGIEICYPYHPLYRQTATVLRVEHTKGESHLRVITEAGEERLIPRWMSDPNAFQPSSVEQPLIGLDALRHLLRVVFSSPLHLSRRDQEGRRDDPIAPVSAASEPQRATSQQGVQRSERPCRQPADCSDCGEQKETAAAGDRQP
Ga0208726_100030	Ga0208726_1000302	F006679	MKPSDRYSVSLCTSCHELQHRFGELTFWSVLRIDPLNVALRLWTVSGDLEAGERIVFR
Ga0208726_100064	Ga0208726_1000642	F030235	EAIITQLVNRSATADLRAIKILLDMLRDIEGQAEPASPETSAFSEADEKVIEQLRARFSKAEK
Ga0208726_100104	Ga0208726_1001041	F030235	GGRRTISKRRAIITQLVNRSAKGDLRALKILLDILQEMERRIEPGSSETFSFGEADQKVIEQLKMRFSKGEK
Ga0208726_100157	Ga0208726_1001571	F092161	EGGGAAVEGPASEAQVDLLYRQIGQLKVENDLYEGLGVKQDAVLLCAAMTAAL
Ga0208726_100183	Ga0208726_1001831	F000708	MTKPDLALSQIAARFTQHDVEWSRGAFMIIDRRTTNPIARLRPIPDTDRFELFYWSNLKGRWTTFGNLGRMKLMLK
Ga0208726_100262	Ga0208726_1002621	F088860	MGPPLRSFAADAHGCIMVRVPGPAGYKVVARLIRARK
Ga0208726_100279	Ga0208726_1002792	F016708	MGKQRREQPQDSIFVDNPFVDEFLEWMGSREGRQCIEVRDVLWDLLEDAQLDAKQRQLIWPDAERLDLVQSIQRIQKLYPDFPGHEIEEVLLNWIDMGYDPKNYSQAQLNEFDSLTERWVADHLRNANASKTRK
Ga0208726_100387	Ga0208726_1003871	F063010	MDTTASSFTARNNAKRAAEKMIANGKAPAVNYGIRPRDDGRFEIVWKTAPTTGEVEAEIATAATAAEDGHYNTNPRFSVNEDPSDAPPNAGAEEAAAATGNEPAASSVPASGAPERDNKWPDGTRVMVRNKPKSWSEATIYTRLDAEYWRVQYPSGGTGMFKEGDLRAYDAERDAKRARQPRRARAAGPRAASRSRYALDPAVIAAGKLPDKAPVVTSAANPHYQKRFDELHKLAAAGDWAAVRDYKVSGSNSYSKLVARYQQDLLALHAAWEAAQ
Ga0208726_100696	Ga0208726_1006961	F000083	MSTLDEITQEKQRVSEALARIDAQRQKLAGQLGELEATERVLARYNTGTKRTVSAKSPPSPTKAVAPAQRQRGRRPATTAKPGDGRRTSATLSDQVLALATGRTQHEIASACKGARPNHVGAAISRHKRAGRIEERDGKLYASQATEAAQHAAV
Ga0208726_100898	Ga0208726_1008981	F025158	MLQSEVLQPLETTRNKIKEQLSTVQEYRLLVALEKCIAQIPDISNDTMTTLERVRERLKECLQEVRDYRALRAIEETIVEVRSILAEAPSAVQPQAAE
Ga0208726_100943	Ga0208726_1009431	F055962	VSSDEKVFDFPKAEITSEEKVRRAMAEAKRLASLAPGEWRLWIDRAAERLGVPRATLEGLISAIIKDSERKA
Ga0208726_101198	Ga0208726_1011981	F003045	IRGDAAAIFLALLTLFMSGASAQGTKGPNVIIRLRLAGESVALPPIRSCLVDKLSQMPDVKVATMPTDGARFIVDIVASKSTDENISASLMVAETFPMEQFRPRIKEGEDADALLKSIRYYVLLRMHELIPARSSESLCLTIAADIGDKVLSKEYTERSD
Ga0208726_101546	Ga0208726_1015462	F021875	MSTDSISPPSRSSSPAARRMRRYRKQRRQGLRSVRILLDETDIDALIRMRLLKEDQRQNVEALQTAVLGLVYRAQEDLA
Ga0208726_101718	Ga0208726_1017181	F006319	MAYERLDKALRQLKTDRERAEATENQRKRAGEEARIRFARIKSAVIGPIFDEVVARLVAKGFFGETVDEQNDASGPISLDVNLSEDDGPSRQGRLQVRFDLDKHTCEFGKSTSAKTASTIQIMFDDRHYKFDEITE
Ga0208726_101917	Ga0208726_1019171	F088860	MAVMPRGRMGPPSRSFAADAHGCIMVRVPGPAGYKVVARLIRARK
Ga0208726_102021	Ga0208726_1020211	F003793	MVFMPNKSTPDYWFEKAHQCFRRSRTDSNARVELEALGNEFMVEAIDLDIKLQNLAKGNYTASSPARA
Ga0208726_102171	Ga0208726_1021712	F017181	MLTCEGRALVTEIQDRLIELYVQQDEARREHDPDRAHELQVEIDKATVQREEIPR
Ga0208726_102231	Ga0208726_1022311	F018406	VAHRNREVPEERALNLRCAVHLGEVDIVSNDREGPHVSLAFRLEEISRASLPAALNPIPPEQFPLQNYVLCSEEVAGILSRRATRWELASIGLLKLKGFPGWREVFRVLPEVHPSDLSEAGGRPG
Ga0208726_102379	Ga0208726_1023791	F055300	MQLVPNQLPPERLIVSLDAQESRVAEDGADSPFVLKGAGTMSGNSRWIFIGVIIGAILLSIGGIIYTRLAGKEGDRFGFHTFIKARTHHLAEPGSTASPAPIVIQLSPEMVRVSAIALGHPRLAVINGKTVAEGDNVHLQAPNASLGLILRVVKI
Ga0208726_102456	Ga0208726_1024562	F000514	MLAERRFPVRIRIGIPPEGLGRRHAQLTAWLDENCGADGWAMTPSGTRGVLNDAVSIYFPDPALAGAFVARWCIGYKVETAE
Ga0208726_102530	Ga0208726_1025301	F067153	EAEDERTRAICSGMVLERAWGKPREYDPDKEAPKRVPPFNPDLYTTDELRQMQAVMLMMARRQGLVPEEGEAV
Ga0208726_102546	Ga0208726_1025461	F053913	VVRLNFGAGASRGSCSTTQFEGRLAMKAVSCCATTLALMAAIGLSPAMGQGPKPSGGRTWPGIAQPVEHDADPAHSANPSFQGASPQGTSQRGFVVMPFDPEAAKIKPHYEWQYHYTGRHAHWEGHWTL
Ga0208726_102689	Ga0208726_1026891	F000156	MARRTPPRKVTYFEPVPPRLARNTIIESTFEVGRRFRCTMRVDCGQLDPGALIRPVPGEWHPRMPERLDEEELADWRTGRNPVYQLAALTIGARLALAEA
Ga0208726_102804	Ga0208726_1028042	F012290	MAGRNCGKVTAGNLTPSGCALVALLLLAAALSPPTAVAQRTPQPVFTELFIYDPAAPSQLLGKWLISSQLDTKLQPLRVGVVEDPIGKTVGRVTVQEGDGLDGASEAMLQTKRYVCDSKGSRAAAMEAEPGGVVPSERAEIQVR
Ga0208726_102994	Ga0208726_1029942	F063125	MVRPRPIRRAIHLEFAFDRLLAAKLEQAYDILVPGRVRLVGRAK
Ga0208726_103035	Ga0208726_1030352	F080276	LAEALAAIMAAYPEADRIRCYEYSVDNEFPVEVAPLLRSGEKWLPGD
Ga0208726_103078	Ga0208726_1030782	F021837	AGRALGSASKFLPRWMVRMRPLLLPAFLAFTAAVLPPNASIGQDAGFGRDADVHVREDSFACKETSELDRLLQRNQSGGFTSGVQLYEYLQSHNCIGLSAGRVRVRATHGQYVCIYDPKGKNKTMKPCAWTRKDMLSK
Ga0208726_103458	Ga0208726_1034581	F024143	FVPLQFWNESLATVSATNPLFEALTSTSWEFVCWDQVQLTGPVGINVNLTQAFQGTRKGIVRAGPAMKVENGAPNDDIGPVTLLGLIETTEGTAANVFLERKYNFNVNVTGTPVATRFVPFPFSGPSTPPAAD
Ga0208726_103511	Ga0208726_1035111	F015805	MRAAEIEDFLEGFNQPTYRGMRVNGVRVATWSSRDGWSGDSRPEAEWLR
Ga0208726_103524	Ga0208726_1035241	F007822	MIPRTAIAQIAKEIGRELNSGAQPSEEALAIGPILAEAGATPEIVGRLFAEAQRNRRNDRMIHAYAFMLEGALGTLRVQASGGDVGADHTIAAVHKEVADNLRKSSIAPDVLMLVARAFARAE
Ga0208726_103601	Ga0208726_1036011	F007656	MSLYRCRFLDSTFNVFEIQGVACENDAEAIMMARRMSANTGADRFELWQNERCVHSETMA
Ga0208726_103798	Ga0208726_1037981	F010428	LTRKGGYAFDSWTPEEGLSRGYTYGRIEDARHARNFEIRSRKKGDSDHTIACSTVDDFVRLTI
Ga0208726_103833	Ga0208726_1038332	F072553	MIFSDLPSPAEASSQTMSRAKGFAQAGNGFPPRIKCGAGFFGITL

Showing 1 to 34 of 34 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027099: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences