3300027051: Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027051
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114435 | Gp0111902 | Ga0209269
• Sample Name: Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 219142440
• Sequencing Scaffolds: 58
• Novel Protein Genes: 66
• Associated Families: 49

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	16
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.BinA087	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaB.Bin027	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: New Jersey, Arthur Kill intertidal strait
• Coordinates
  • Lat. (^o): 40.58
  • Long. (^o): -74.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003929	Metagenome	461	Y
F010394	Metagenome / Metatranscriptome	304	Y
F016758	Metagenome / Metatranscriptome	245	Y
F018395	Metagenome / Metatranscriptome	235	Y
F019675	Metagenome	228	Y
F022683	Metagenome / Metatranscriptome	213	N
F024821	Metagenome / Metatranscriptome	204	Y
F032706	Metagenome / Metatranscriptome	179	Y
F033858	Metagenome / Metatranscriptome	176	N
F036104	Metagenome / Metatranscriptome	170	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209269_1000006	All Organisms → cellular organisms → Bacteria	640223
Ga0209269_1000007	All Organisms → cellular organisms → Bacteria	550542
Ga0209269_1000019	All Organisms → cellular organisms → Bacteria	434838
Ga0209269_1000054	All Organisms → cellular organisms → Bacteria	225456
Ga0209269_1000076	All Organisms → cellular organisms → Bacteria	173764
Ga0209269_1000098	All Organisms → cellular organisms → Bacteria	146121
Ga0209269_1000119	All Organisms → cellular organisms → Bacteria	124959
Ga0209269_1000405	All Organisms → cellular organisms → Bacteria	41490
Ga0209269_1000528	All Organisms → cellular organisms → Bacteria	34554
Ga0209269_1000616	All Organisms → cellular organisms → Bacteria	30327

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209269_1000006	Ga0209269_1000006242	F103505	MDPLVRQEYETKLLDWIAQGYQILADDVDGELRLTVLYVFAEGAPASEREQEHWPMTAEIVQMLDDNGIEISRALAGPRPWAGPHPE
Ga0209269_1000007	Ga0209269_1000007221	F051062	VPVRFADQEWTEFVFRALYGSYAKGFAEVASSINETDADSGTVTFEAEGDRLVRVLVEAEYTPRRGTGAYEEVATAQEHLEHDLEKYRIFVLKRCEQESCRAS
Ga0209269_1000007	Ga0209269_100000795	F044471	MPRDQKPPSPRTISGFLYVAVLLIAVALVYVAVRALLA
Ga0209269_1000019	Ga0209269_100001922	F062490	MKTRGWFAGFISTLAFVVIVLAALFGIFTLVSYWAGPVGG
Ga0209269_1000019	Ga0209269_100001938	F010394	MSETRDLRHPASGDVQQWRAEFDELELRMDALRQAFTDGVRSFAMTDEIVERIHACFDDVGEQVHSMHCTYPFGGWPGQEDCRFEPPVPYDSDAAAGQD
Ga0209269_1000054	Ga0209269_100005436	F086617	MPTIHASIDVDAPVEFAELEWSEFLLESLLNGYARGLIDEEPLLDEDDMKAGDVQFTTEGDRLVKVDVRLDYEPRSTGGAATEMARAQATLERDLDRYRRFVAGRCERLGCRPD
Ga0209269_1000076	Ga0209269_100007627	F019675	MLRTRQIILVVTAILGVLLIVRGAWGGVWPPSIQLIAGVLLLVFAGLRWWTMR
Ga0209269_1000098	Ga0209269_10000984	F036104	MGQEGIPISISIIVAAAILGAMFFIVGMALVLVLAG
Ga0209269_1000119	Ga0209269_1000119106	F049598	MKKFVVAALAVVAVLAFCAPALAWPVTQQWWQPSPHFTCVGKIQAVDATASTVTVRVHLASRGAADYLGEDLTIAVASDARILKAVGKRLRTIAVSDLVVGEKLRVKGKIDYASGSASFVGKRLVMRRLALNEIRRFAFRGPVTAVDAAAGKLTAKLNRVTRALSPCYHSTCDFVVAPDARIWIMKNGWPVKATLADVVVGDRVYAQGSADRSTPSAPVFTIRWMVVRHAPAE
Ga0209269_1000405	Ga0209269_100040526	F088154	MEWWVYGTVWFIIWVVCLWLVWRMVDRKDLNRAGWIILTIFFPIIGLIVVALLPHRQRPEPPEVMP
Ga0209269_1000528	Ga0209269_100052810	F082080	MSESMTDKEAARLYRLEDIGISLWGYWGVERPGQPRLTNRLAKEVVRFNAGTAWASLLYREVGKGCVMLSLPSLKVAGSNIVHITESDEGPVLVAIEGDDEETWTYGVWLYRLVRRIYPSKGKGGKPGQISWKIVAAWLREEPGLLKQFVELLVERKLRRWEQEQKGVAIQDSDRKWARQDAFLEIKRGLARAGLKLAELRKDSWPEDR
Ga0209269_1000616	Ga0209269_100061620	F085858	MKDFKEVVKLKIIPTTFVFRCSLCGAEITNYDRHFGLIKMNEHIVANHSKEVNSLGREDLYSRKMDIILEKF
Ga0209269_1001328	Ga0209269_100132815	F043480	MREVLGLCIALAAAALLFLNIIESGVAAMIGIPGIGLIVASGISKIKRL
Ga0209269_1002881	Ga0209269_10028815	F043480	MNKILFIIGLCIALTAAALLFLNIIESGVAAVIGILGIGLIAASGRL
Ga0209269_1004065	Ga0209269_10040652	F019675	MLTTKRILALAIGALGVALVVKGAWNGVWPLSYQLFAGVLLLIFAVLRWRSL
Ga0209269_1006460	Ga0209269_10064603	F043480	MNKILFIVGLCIALAAAALLFLDIIESGVAAMIGILGIGLIAASSVDRKSSGCK
Ga0209269_1008979	Ga0209269_100897910	F088355	MKNLTNKISVFAGRKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_1008979	Ga0209269_10089793	F088355	MKNMTNKIGVLVGRKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0209269_1008979	Ga0209269_10089795	F088355	MKNLSNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_1008979	Ga0209269_10089796	F088355	MKNLSNKINVFVGRKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_1008979	Ga0209269_10089797	F088355	MKNLNNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_1008979	Ga0209269_10089798	F088355	MKNLTNKVSVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_1009973	Ga0209269_10099733	F082739	MRRLLCILLVISAVFTGISAAEIQKDFRYTNVNFTPFDTNGTEDISDDILLPAVLGDLLPDADGNGYFDVSYVVKKNGKVASTNPGQLYGVITINNTTETTFNVTDVFGTQFDINPGKLCGGVDILRIDADGYATELSGTDQVVSATVDNDANTVILEIALDEPLAADEELMIYCKFQTALKGLFPDMTTFINEVTVNGETASATVEFV
Ga0209269_1010962	Ga0209269_10109622	F043480	MNKILFIVGLCIALAAAALLFLNIIESGVAAVIGILGIGLIAASGRSKPSGCK
Ga0209269_1011829	Ga0209269_10118291	F042955	MNRLVRVMFVAAAAAVIAWLWYSSAPELFRAGMPSITEDADFALLVRLTGFVVIITVGFYFALRNLMKK
Ga0209269_1012912	Ga0209269_10129123	F016758	MNVKGIIFNTGKTTIISVFGEKAWNDFAVKLAAKDKFFGNMIMTITPIPIDKFIFFLDELVREFFNNDFMQYITFGKVAAKFALSPEGPYKSYMLTTDIKQFVQTVMPKFYSTYFDQGTVEARLENNTVHLTLTGLPIKHNYFEYLIMGYFQKSLKIFGKKVVANRIKSFAAGDDCVSYTFEIKES
Ga0209269_1013282	Ga0209269_10132823	F049074	MDELLKKIMEITGAGDEAARKVVDEVVAYTKSKVPGPFQHFVDQIFERDE
Ga0209269_1013891	Ga0209269_10138913	F045834	MKRQGEVRMLLFIMTGMAFLFVAAVVPLSGFSIFLAAQVIAIVLGGFTVVSLFRRYRGLDLLSAASIFFLYILMVSLFSPGLVNALAAYLTK
Ga0209269_1015804	Ga0209269_10158043	F045836	MESPNLFAVLAYYIISAFLDPIQWLICVICGWSVERVDQAMIAGAAMVSVLFIALAWFYPDGKLFSFPTPHVGIAILGKAIGAVLMTGLIHWLKARQMKRKSGT
Ga0209269_1016047	Ga0209269_10160472	F097001	MHGLRDSFGTCVYETYGVKQAQEWLGHGDPATTLRHYVRLTTAAGAEAVAGLDEVTRAALEAVQAHAGKDRTPVLDNVVELASRRR
Ga0209269_1016096	Ga0209269_10160961	F049736	METPLREWMKKARFAYWLIVGGLVFFAVVIALGMAEIISARQILLLGQVYAFLLIAGMLLQMIARRL
Ga0209269_1016096	Ga0209269_10160962	F052016	MSERINVIFSSTNKNFLYNCEIPISMLPRIGERIRLSIPGYSDIRCYVEDMEWQYAELEKRIDISMVARIKMLQED
Ga0209269_1016369	Ga0209269_10163693	F060095	MEKKTQTREDRLEALEDIRLRGLYLHGYAITMDSAPVLFDSSEYQQLVDQFYEENKDLVTPVIHRACRENYEFFMTIVETTLNRVRTLQDTTAE
Ga0209269_1016507	Ga0209269_10165071	F043478	MDPSDGHSAWRFQYSHPAGTAAKAKRVSLLAWLANLIFLSGTLLFAYQLYGWIGHNEWTRYPSIALVKYLPAGYFGFLNEIAVVKELILWLLDRADLSVLLILMGFFITKFLVDSE
Ga0209269_1016530	Ga0209269_10165302	F099497	MVSPRFFLPLLAALMILIGGCATGTVYLQMNQLPTDETLRSGLGAEAFNAIRYVTVGPSANQNIGYFLFKDGTAVTMTPGAPLERFDRKLSLRETVDDYFDQAKSLGNKRINPPIIREVLKGKNVVGYSVADMNMGVGVWDRVGAGDASSTTLELVFEPAESAKKSRSVMAPCR
Ga0209269_1020326	Ga0209269_10203262	F044576	MENEPALEEALLVEDLHTGELIVERANGEKWLLDAKKAWCPWGYEYEGKRVMLRFGPNTSFLINDRGEQCEFWTDKQIE
Ga0209269_1021707	Ga0209269_10217072	F105433	MPGDVSSTRIDEATESLNTKKFYLLLLFVSLIGVLGALMMFAFFILEDIIAAFLWNGIPIDSLSPVFNPLILVICVLGGLGAG
Ga0209269_1022533	Ga0209269_10225331	F016758	MNVKGIIYMTGKNAIVEVFGQEPWNSFMVKLAAKDKFFSNPIMSVTPVPLDQFILFLDELVKEFFNNDMMQYVTFGKVAAQFVLSDDGMYKSYRLTKDRKQIIETIVPKLWATYFDEGMVTAKLENNIAYFKVTGLKFKHRYFEYLVMGFIQKALKLYGLKNVPKLVRSMAAGADDVYYQFELKDA
Ga0209269_1022707	Ga0209269_10227072	F060102	MPAMSKKEKKKTETQPPPAREEKESFISMFSKIDSRQRHRILAYLFWLLGIFIILFAYRA
Ga0209269_1022848	Ga0209269_10228482	F052017	MKRGCLTKDDVERFEGELGKLIVVKKAIELALVNPAIRDDQKQVYSLALAQCERTLREFRGALIAMRVGLTRWASKGRIEQAA
Ga0209269_1025168	Ga0209269_10251682	F061952	MKKTSPWFILLFPIAIPAMIVLDYFGYRIIALMILVALVLSFAYCMYSLFTKLRSLRGAFATLAQALCDPGSSSVRHYPYHHTLSGSVAGRRFHFSLLGHDERALCQLFLEYPVGRDFLMEAGDDAAQNARDLPQDVGAIHRLPGFRSLRALSRRVPFFSRFLSGLAGSGGPGLVLRKQGDDPLSPPVLKRDLEMLLRLAESLGEVPPSGRKDR
Ga0209269_1025371	Ga0209269_10253713	F043480	NKPLFIAAVCIAVAAASLLFLNIIESGIAAVIGILGIGLIALSGRL
Ga0209269_1025958	Ga0209269_10259582	F043480	MNKTVLGLFLFIVGLCIALAAAALLFLHIIESGVAAMIGILGIGLIGAAGAVFASRS
Ga0209269_1026624	Ga0209269_10266242	F024821	MEGSTREKFIHTLMQYQEKFGQGKASAIQEKFWQSREQIVAESASEIEWFPSWKKNQILESLLAKTYMDLIAEMESEGLS
Ga0209269_1027553	Ga0209269_10275531	F032706	MKAPNKTATIYPWVADLTETCLGKTRARVAEVMVTNPTPEKVFAPAGGYVGRVRKVAERIVLYEKRGPIGVITAKVQNVGEVYDEIDDLLNEIEQDEDVRVIAIYTLNGLFASLPIR
Ga0209269_1028219	Ga0209269_10282191	F101441	VDKKIISAVALIVLFVFTLLYWTRFQVIDVHAMNGVGFYKINRLTGETVLVSGLDQIRILPVKDLEQPMLQLPAAPGKGQQ
Ga0209269_1029006	Ga0209269_10290062	F051235	MEEGQGEVVSIYKRKLSRQILAFASVTMRWPILFVLTLCRFLKFNCIFTVYPGSQRDIDGYFPKGLNWFLKPVASGKPFVAGMITTGNGLGRGLVLAVPNSIDQIRSDKQLVGKIMKRLNFTRQLTGAKTIAIAGQGPRYFKTHQPFTKPFVYGLRGRVFSVVETVDRIMEEHRLERDKTTVAILGVGEIGEAIIENLRETGVRAVGIDIQVKDGRVELCSEG
Ga0209269_1032298	Ga0209269_10322982	F049732	MDALRILFNVLLFTASLFAAALFVEKIYAGRWKWVAFTILITFVIGFALLPGTLIDVINALPGEMSFANAATLILGGVAAGFLATGI
Ga0209269_1032862	Ga0209269_10328622	F022683	SDMSDNMKPVADYYARWSKDSLDMMSKGMAMYNKMSKAWMDVTEGLSREKPDDMLKKWTEAFSGSYNELFEMYTQPFKRFGTGQVPGKEAWEEAFAKWQKTFSAAPAGSAPSAGPEEFVNFSKNWFEGYSKVWQTWLESMQKMGDACKSAVAEGEKPGAAMSDVSEISDRFMKEWSSFVSEQAQSFFALWKSRLPAEKKESKKAKKE
Ga0209269_1034488	Ga0209269_10344881	F038290	MNTNVIDHRTVAEDFGRLHVRKASRRVSPIRRFKNLIELSDWDETILRHGSQIDVFCWMLAIGTAALLLPVSFLVLKG
Ga0209269_1036921	Ga0209269_10369212	F033858	MKKLESLRKIRLSATMLEVGFKSENLGEIIQCQIELEDLAERLLAENGDLVTPEQCESAKKSLDAFVSLIDQAMEKATHSESVPSGPARPKPTTLGK
Ga0209269_1040609	Ga0209269_10406091	F043480	MNKPLVIAGVCIAVAAASLLFLNIIESGIAAVIGILGIGLI
Ga0209269_1041050	Ga0209269_10410502	F066901	MKHPWEAQVAWQICNLISELDVLLWELYWDEFEAIYNEEEEKYWGSTIHTEKQPSHT
Ga0209269_1041320	Ga0209269_10413202	F043480	MNKILFIVGLCIALAAASLLFLNIIESGVAAVIGILGIGLIAASGRV
Ga0209269_1041656	Ga0209269_10416562	F103516	MRTTLILLLAVLIAGCGAATNVQVIKPVNGEIKSFLTPELQKSRCYNFMSAGREGEMIAKKSNILLNECNLTAKDAVNRVTYLTYTTRDAYVAESGENQVISKRVMGNKDIEIESRLFYEKEGGVRGIQVLINDFVDKGYVKGYEPEWVVRALYREVRLQDGKIVVVRDGMSRDEFMKEDEIEHYKMLNRMLKENR
Ga0209269_1042627	Ga0209269_10426271	F039694	MKVLAATVEEREIRDEKRSTMESSIVDTMRRYFQNDTGKSKGDLEYAIINSVQRYFEGKPPERL
Ga0209269_1046494	Ga0209269_10464942	F086617	MAAIKASITVDVPLEFADLEWSEFMLQSLLSGYTRGLTDVEPLIDEDDMKAGKVDLTTEGDRLVNVAVELDYAPRTKDTADEEVARAQATLERDLEKYRLFVLDRCEKLQCRTE
Ga0209269_1047759	Ga0209269_10477591	F042959	SEIRVRLKELGPVAEIRLTRANLPLFEEDEFELWLAWGGQRKKYNVPVGDGKALFGILPDSVSPLTDKKPQKSNEGLIRELTLAGVAGEATFPMSWGYAIPEEWKPLEQVYNRIIEMARQYSGWQVF
Ga0209269_1051735	Ga0209269_10517351	F085863	MPKKKKTRDVEEILDGNIDQFEKGVAGRAADDLDETIRTLGRYEDEEVTPRPDTETDRETPPAEEDLRARNILRVEIRGDDCEIVCGQIRSKAKDRVEEYCRQRGLSVSDIWYWEDEVMARLVGPNWNAWYDVDDFFHETGLLGPTPSSFSIVVTVDDEAVEDLNIRKIKTSRIESGSKPLPRKDHVAVTAGTIGEGRYAFELDIDGEFVIGKLEFAFLDLSTLGLEE
Ga0209269_1054567	Ga0209269_10545671	F049730	LGSFEKLKQDLIPALFRIAGDREIGHIDIRSSPETVDLKRLMGYTLIFVAFEIYRDHESFFRMLPESIQDRITILARPADFPSVTPEIKCACYSSELKALLPREEAQFLHHPAPAKPR
Ga0209269_1055793	Ga0209269_10557932	F101439	MFFYICEHCAFETQDPKKKICERCKSELLLKCPYCGKPMKKDRTIYCTHCGENLKISICPIQ
Ga0209269_1056530	Ga0209269_10565301	F041155	RSSAESVEVGVHRGLSVDGVSGTVGFDLSVLSSLDRLNLVESII
Ga0209269_1061901	Ga0209269_10619011	F018395	MSSGMKLDREDTAYAEKAHELSLKNRNWLRHGSKTSAGKMDEMLFGGATVEQLAKGAKTTKASVHVHLTHLRKVHKLAVIKKDGVFRYDVARMDGNKKSKMKAR
Ga0209269_1066421	Ga0209269_10664212	F043480	MNKILFIVGLCIALAAASLLFLSIIESGVAAVIGILGIGLIGASSVDR
Ga0209269_1067596	Ga0209269_10675962	F003929	MQGAQKLRRAVHLPVRRNDEVEAQRRRWPFYETIKF
Ga0209269_1073508	Ga0209269_10735082	F003929	MPIAQKRRSAAHLQVRRTDEVEAQRRRWTFYETIKNYETKG