Sample 3300026952

Basic Information
IMG/M Taxon OID	3300026952 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0056003 \| Ga0207434
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0095510 | Gp0056003 | Ga0207434

Sample Name

Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	67595070
Sequencing Scaffolds	45
Novel Protein Genes	48
Associated Families	47

Dataset Contents

Total Genome Size

67595070

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → agricultural field → agricultural soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Wisconsin, United States

Coordinates

Lat. (^o)

43.2958

Long. (^o)

-89.3799

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002315	Metagenome / Metatranscriptome	572	Y
F004397	Metagenome / Metatranscriptome	440	Y
F005593	Metagenome / Metatranscriptome	395	Y
F007385	Metagenome / Metatranscriptome	352	Y
F008734	Metagenome / Metatranscriptome	329	Y
F011426	Metagenome / Metatranscriptome	291	Y
F012408	Metagenome / Metatranscriptome	281	Y
F017166	Metagenome / Metatranscriptome	242	Y
F017457	Metagenome / Metatranscriptome	240	Y
F017530	Metagenome / Metatranscriptome	240	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207434_1000223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3595	Open in IMG/M
Ga0207434_1000575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2499	Open in IMG/M
Ga0207434_1000960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1959	Open in IMG/M
Ga0207434_1001686	All Organisms → cellular organisms → Bacteria	1531	Open in IMG/M
Ga0207434_1002170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1377	Open in IMG/M
Ga0207434_1002409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1320	Open in IMG/M
Ga0207434_1002525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1296	Open in IMG/M
Ga0207434_1003649	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
Ga0207434_1003820	Not Available	1090	Open in IMG/M
Ga0207434_1005603	All Organisms → cellular organisms → Bacteria → Proteobacteria	936	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207434_1000223	Ga0207434_10002236	F063910	LRINQVTNKQPNGQEVAMSERYDLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207434_1000575	Ga0207434_10005751	F017538	SLTLVRASRNRDGEWSSDDYDVFEGKQLVGRITLTPQAPEGRPWFWTITARPESSQNQGYAVSREQAMLEFNARWRNPARV
Ga0207434_1000960	Ga0207434_10009603	F025757	LTLSYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA
Ga0207434_1001686	Ga0207434_10016862	F044475	MPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDANGSPVGTVNSVV
Ga0207434_1002170	Ga0207434_10021705	F060880	QSPCYPISKMEVAMRISADFRKTQRRRAELHSRSEAMVATIWLVFYVLGIAVAVSSPIISRAIELAAQ
Ga0207434_1002409	Ga0207434_10024092	F029488	MHPIALMTLAALLLAGCAGYSPECVTGTGTKDCATGTLGHQQMTQEREGDETVASIDDARCRAIAAPGSGEYLACRQRAAKTRSAGR
Ga0207434_1002525	Ga0207434_10025253	F049708	MLIGFGILYLVFVLSFIPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDVAEILLAVILVAAAVYSALRLRRKDLTPRWRGTHTFFLLLALTLV
Ga0207434_1003649	Ga0207434_10036491	F021796	VSLRSRLFAGISATVLVSLVVTVVAGALLTRRSLEHASIKALERQVELVLAQRQANPGRGTEQDLGQFLATDEQRLAIVTPAQAELLLPEDGATRLRTSGEAS
Ga0207434_1003820	Ga0207434_10038202	F079360	MRQTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLPVAEIPQP
Ga0207434_1005603	Ga0207434_10056032	F037759	GAARAQPPELGASSIGILPPPDILESVRYLGLDPKGEPVRRGAYYVLHAYDRAGIELRVVADAQFGDVLFMAPALNTSLTPPYTRAARIIQVAPESGDQQKR
Ga0207434_1005900	Ga0207434_10059001	F097111	ILQERYADRIVLRDGTQVFLTAKLAAGEFAIGSSLTVAYTVKKDGRKMADNIWRCS
Ga0207434_1006317	Ga0207434_10063171	F089000	MGEPTPATPASKYFAATVAMIAGAFVFAIGAGLLPIPGGPSNLHGPLWLLLCVGLAFFLAGLAILIQMLSHAN
Ga0207434_1006317	Ga0207434_10063173	F002315	MKRVAVLSMAMLTVAFAADKKTYRYNCKGGAFTVTAAVEASGRWSKAEPVVLQIDSEPPQTLIADPDVPDADSFTNKDYEFYALKTFITLTRKSHGVVVKTYNACRV
Ga0207434_1007134	Ga0207434_10071342	F017166	IMFIVALGAMLFIGWLYLGEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQGAEIDITATHDFDRKK
Ga0207434_1007167	Ga0207434_10071672	F028161	KHPVLDFSAVGSKPAYGRRRMKASHVVTLSLAAVLAALAIQAVQAQDNKNIREDDYVRKVPLEDFKVPIVPIIPPGSSLDLRPGRTPDSADRIYNSTPFSRDPTTPSIGLSIKSPFDDRK
Ga0207434_1007289	Ga0207434_10072891	F051177	MLEFGVEVTTAELIALERALRGLDTDDARAAVTKAHRSPTALTANEREAVLSALRALLGDPGAADNKWEGLARLAAKLEHEQETAVA
Ga0207434_1009315	Ga0207434_10093151	F051512	MSAVYTLEQILNRLDELSLDGRAFCRSLLSHGEVLAVQLSYLPEALLWLVTSPTQTRIMRAHQPECMILTLAEACDLFTALGDPCPASLMEVAGRFATAAPGTPEWKDDDVEPYEGRDED
Ga0207434_1009661	Ga0207434_10096612	F011426	IFVELPAGPIAVPARLVRKLHTRCASCGETAIHDEAWQAEVWADIHEFEHSRHRVRLFEQTRADGLKEISDWRDTCA
Ga0207434_1010124	Ga0207434_10101242	F035105	MTRRSLFFVIAACGLSFALAASASAECAWVLWSQTHDPKPGAWMLQTAYPNVGDCTKAIDHREKEGRKATYVMEDGRKIKGVTDRRAPTDLF
Ga0207434_1010732	Ga0207434_10107321	F079285	MSQGMCGDRRPVSQLHSADDVPELMRRAMRSLVRAEELARDLARVSDVERESLHAGFLALVRRYVLQLREEGEQPTRAAARLRDELDDSLMPFSVRHHCSALIDEAETSVREVFTSTLTHSGEGHSISAPGR
Ga0207434_1010885	Ga0207434_10108851	F029216	MYMLIVVIGVLSQGASVLPVGVTSQIVGKFKNLDECKAAAKQPHAAGPIADITVVTTWGANWYCTYSGPN
Ga0207434_1010933	Ga0207434_10109332	F008734	CGRRGFQQAGPLSGVLHGFSSQGDAARDGATDLGQKDCHHCIDGVEERSRLRRPTSETTNSLSVSDRVRSLLETFSGGDCRVLETLWFESESQPVS
Ga0207434_1011625	Ga0207434_10116253	F029148	MTSLEWMEVEIRWRGKLVKGRYNISDDLVTVAAWNGTKAARLGILPAERLAKMLLRELA
Ga0207434_1011691	Ga0207434_10116912	F065229	MLLIRFAISVFALMLLGLAVSLSTAQSEQEIHAATAATFTHQ
Ga0207434_1012470	Ga0207434_10124701	F004397	AKLSGLSAFDALTRVSIENHAKAVFWPIGVAIGGKAAMPEFDLKVALIIFVTKVIDPFAALPALVAGYFCRTWWQVVISAAVVGIFVEMVLVLFEPTPGIHQGRLLMAVLAAGVWSNLAFAFKTWRAKRA
Ga0207434_1012512	Ga0207434_10125123	F021567	VFRTERSPWLTYGSFEFDPDTGHRTVPLVRDDGTTAAFTIPEFVSEPRDLGAIARIVIAACERWENRQGVGG
Ga0207434_1013568	Ga0207434_10135682	F085355	MDSLRAALTSIKNLLDWLPDLVVALLILAIAVLFA
Ga0207434_1016949	Ga0207434_10169492	F095078	GGRPADVPPLGAVPGWIALPVGRAEAGPSIAELVEAVRDAGGMVGGDALFDPRYEAEMRRFLIRALEMEGIPVPRGGDRP
Ga0207434_1017664	Ga0207434_10176642	F017457	ICDDSFKNLTILATDSRPGVASQTRRFATLVAPRPCGVYTRHWLPATRFRHGRYTVTLRATDKSGLTSLPAKRTFNR
Ga0207434_1017715	Ga0207434_10177151	F098246	MAKKQAAKMADTFETIKPYLERALTDEEFRQDLKDALSAARELYGPLTKSNGVAAGAKTLATDKKAQEHLRRALDDLSSAANTLQ
Ga0207434_1019518	Ga0207434_10195182	F057570	PPKIDLDLYCFLKRSILQVTAKRETEARKLVDCQLSLFNGDLKSDNRKQLPGRVFLE
Ga0207434_1020010	Ga0207434_10200102	F017530	GPQAQAFGQALSNRLVGGYPPSEVAEQVVAGIREGRFYIVPAQPDVKGNIAIRAQDLLELRNPTLRRG
Ga0207434_1020767	Ga0207434_10207671	F070402	MKTILYTICIGSLALTLTAGGAQAAKNKQPERAKPQQRTAKVQPARPGNTGRTLAAHRNVPTAQSRQQLYAKPRSNSA
Ga0207434_1020876	Ga0207434_10208762	F098246	MAKKAAKMTDTLELVKPYLERALKDEDFRKDLKDALGAARELYGPLAKQNGVSGSARTLATDKKAQEQMRRAIEDLMSAKDTLQGKKKKSHKGRNMVLLAGVIAGALYNPWT
Ga0207434_1020922	Ga0207434_10209221	F031184	MADLPKLNVVIANNFGHLPMFVGAEKGFFKRHGVDASFRVVDT
Ga0207434_1021179	Ga0207434_10211791	F031900	VSVTTTELAIAAAALAGVSLVLFVLALRRLLSRQAEVTVTMLRRYDERLATFAQTLNDAIAGFQAPPALASPSLEDDPEPMLRTLELARERTQADGAIALVTGGTGTPIVATVGLSESETNHIARMGFPDYRGARAIEVAFAGDL
Ga0207434_1021680	Ga0207434_10216801	F098258	LYSPDGLVGRWKHIEPNDAIANQVAKQTALNALLHRPIGVVTLGAKTFLSYWDFKRLNRQAKRELGKALNNWPKKTPWNVAPRFHLSPPTARENKTNTLSQWYFLRSQPYYYIVLLSPFVCVGLLFFLAEGYVFLLCLHSWILFGTITILSKDVSVRYLEPMSLLTILIFAAFVKALID
Ga0207434_1021777	Ga0207434_10217771	F047102	VTLSIAIPESRKCRERALECRTVAGRLRVQNTRDQMLRVAADYERMARDAEQQEIAQGLSYLRALVVRQRHGGQAA
Ga0207434_1021848	Ga0207434_10218482	F072767	LDLTKRSGFLLAFLCLFLSPARASDDLQEIKRCRSIIAEAAFLVELWSQGDVTDIFARGLLETAQEQLASSVDNPDLDARVRDELKSASAAIESRDAGALRQITNELYARERQG
Ga0207434_1022366	Ga0207434_10223661	F101450	MTEIREIAEDELERWIVTAKAALDEADTVEGYLDWKRQ
Ga0207434_1022491	Ga0207434_10224912	F058768	AAHVAAMRELEPEFDAQWRGLDASGQKTLRAITLGDGSPYRTAALRRLDLTKDVVRRALPRLAGTAEIEERDAGGYAIVDPLFAAWVDRLNDRPADGS
Ga0207434_1022901	Ga0207434_10229011	F007385	MKDVYEVLRQKELEVSRLQTEVEALRVAAPLLTDAEAEDDDQPALQRAANDSPQPDHSGWQDKSKKQWP
Ga0207434_1023091	Ga0207434_10230911	F005593	SGDFVFCPEGRAGQHAFSNPTDEPARILGISAGTFPDVVAYPEHGYAWVATRDPDPELLARGGDPGIIARFEIPIE
Ga0207434_1023105	Ga0207434_10231051	F087487	MKKMDYTIGLEAGRAGQKWTATALTDRAKERTPEPVTFVDRLEALKFLKDSQSEGYRFSGAGLVDPEQRLVKNRYFMIGAGGELTLSGEDNGPRDTVWEIGDVMPGRGRSMGTEAILENILQGAGVRERFGCDLAFVLRLHRG
Ga0207434_1024210	Ga0207434_10242101	F025530	MRISTSTTMQIGEAARDNIAAGIWFAVLAGSLFLYAQSILMTTGLMLELTAAYSTFVLCGKSARSPFVHAIPYAFALAGAVFLCLAPDFHNAIEASLVFLGVTALMHGSVVYSALKNPRETEDPVYASAT
Ga0207434_1024569	Ga0207434_10245693	F023888	RYVGRYGWITAEVTDDESLEAALEWVRESYWLKAPAELRSAVEVHD
Ga0207434_1025145	Ga0207434_10251452	F012408	MRKLTPTLTQSGLLAVLLQRQRYKISQLACRRAQRKHMRAALWSTLTWPWR
Ga0207434_1025366	Ga0207434_10253661	F039294	ETLNLQVFELEPTGEDFLIRGHLPNPVVDVSAGGLSPASLNTVWGNLAPLSSENRPEQTEPTVPLLSPIELQYTNKDIDRLEQEGRANRTNPNRIPEYSSLSQILRCVGAYLVQKRARLIKLWRDSDSVSLEYQTSLGNMLKDTLVVGELYDLWVRMYMQRAERSTT

Showing 1 to 48 of 48 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026952: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences