3300026850: Soil and rhizosphere microbial communities from Laval, Canada - mgHAC (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026850
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099864 | Gp0111022 | Ga0208892
• Sample Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHAC (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37343531
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009108	Metagenome / Metatranscriptome	323	Y
F011453	Metagenome	291	Y
F015418	Metagenome / Metatranscriptome	255	Y
F017338	Metagenome / Metatranscriptome	241	Y
F018438	Metagenome / Metatranscriptome	235	Y
F042969	Metagenome / Metatranscriptome	157	Y
F059463	Metagenome / Metatranscriptome	134	Y
F069724	Metagenome / Metatranscriptome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208892_1000764	Not Available	1503
Ga0208892_1001352	All Organisms → cellular organisms → Bacteria	1091
Ga0208892_1002266	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	847
Ga0208892_1003571	All Organisms → cellular organisms → Bacteria	682
Ga0208892_1003997	Not Available	648
Ga0208892_1004595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609
Ga0208892_1006509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529
Ga0208892_1006843	All Organisms → cellular organisms → Bacteria	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208892_1000764	Ga0208892_10007642	F069724	MALLLLRGFSTPSLLAQGEQRLPSYFNIRRDIPYCA
Ga0208892_1001352	Ga0208892_10013522	F015418	MSIVSRRTFTRGLLASALVPGHSAFGQPNDPAGIAIIDTPNNAAKVAAKLSAQNVKV
Ga0208892_1002266	Ga0208892_10022662	F018438	MGIDDESSHPELCSEVADGVTRTIVCLFREPDAGNLQVRFDEREQETESSQTGLRRRSESQVNSHREAKATAPVLDSTL
Ga0208892_1003571	Ga0208892_10035711	F011453	SWKTERCAPQPAWSKGYMMKIRFAVRAAIILAAAGMLSACVTNRPGDDARLEYERSVADYENCLAANQMSTCEGERRIMRANKRALSAIEKRPSR
Ga0208892_1003997	Ga0208892_10039971	F042969	MRNMIMMAAVAATAALSVPALAQATSPDGIVLTNTPEMAAGYSNKGQCQSTFRQLRNDQRKSGERGGEPYDSMSNSDYNAASNMTTRCEQLEDGRYYVVFNAAGF
Ga0208892_1004595	Ga0208892_10045951	F059463	LAAGGASDIQAAMIDQVQRAHGLYSGDGTFRSAQLEVKLSIEAAVTLMGNFLDSARSDEDDDADKIVLTVFAHPPANKD
Ga0208892_1006509	Ga0208892_10065091	F017338	QGGLLALRAGGSVTLAQRREGDQQELSVTVEGYLPRLAARTGAPLWTGMLYAKGQSPFHAAVSRRYFELLLRSRNA
Ga0208892_1006843	Ga0208892_10068432	F009108	SKYRVETTFQTLGHRSTKVEISHYYSTTTLRAKLLNLIAKGKIARETRATLNAAKATIEAACRAG